Index

A

a (mvpa2.datasets.cosmo.CosmoQueryEngine attribute) abbr (mvpa2.atlases.base.Label attribute) (mvpa2.atlases.warehouse.Label attribute) absmin_distance() (in module mvpa2.clfs.distance) Absolute() (in module mvpa2.misc.transformers) absolute_features() (in module mvpa2.clfs.warehouse) (in module mvpa2.mappers.fx) accepts_dataset_as_samples() (in module mvpa2.base.types) (in module mvpa2.clfs.base) (in module mvpa2.clfs.blr) (in module mvpa2.clfs.enet) (in module mvpa2.clfs.gda) (in module mvpa2.clfs.glmnet) (in module mvpa2.clfs.gnb) (in module mvpa2.clfs.gpr) (in module mvpa2.clfs.knn) (in module mvpa2.clfs.lars) (in module mvpa2.clfs.mass) (in module mvpa2.clfs.plr) (in module mvpa2.clfs.ridge) (in module mvpa2.clfs.smlr) (in module mvpa2.featsel.base) (in module mvpa2.mappers.base) (in module mvpa2.mappers.boxcar) (in module mvpa2.mappers.flatten) (in module mvpa2.mappers.mdp_adaptor) (in module mvpa2.mappers.projection) (in module mvpa2.mappers.prototype) (in module mvpa2.mappers.slicing) (in module mvpa2.mappers.som) (in module mvpa2.mappers.svd) (in module mvpa2.mappers.zscore) accepts_samples_as_dataset() (in module mvpa2.clfs.base) ACTIONS (mvpa2.misc.cmdline.Option attribute) active (mvpa2.base.verbosity.SetLogger attribute) AdaptiveNormal (class in mvpa2.clfs.stats) AdaptiveNullDist (class in mvpa2.clfs.stats) AdaptiveRDist (class in mvpa2.clfs.stats) add() (mvpa2.clfs.transerror.SummaryStatistics method) (mvpa2.misc.cmdline.OptionGroups method) (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) add_center_fa (mvpa2.datasets.cosmo.Searchlight attribute) (mvpa2.measures.searchlight.Searchlight attribute) add_conversion() (mvpa2.kernels.base.Kernel class method) (mvpa2.kernels.Kernel class method) (mvpa2.kernels.libsvm.Kernel class method) (mvpa2.kernels.sg.Kernel class method) add_fa (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine attribute) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine attribute) add_option_group() (mvpa2.misc.cmdline.OptionParser method) add_surface() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) AddAxisMapper (class in mvpa2.mappers.shape) affine (mvpa2.misc.plot.lightbox.SpatialImage attribute) (mvpa2.misc.surfing.volgeom.VolGeom attribute) AFNI aggregate_features() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) all_equal() (in module mvpa2.base.dataset) AltConstraints (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) alternative build procedure ALWAYS_TYPED_ACTIONS (mvpa2.misc.cmdline.Option attribute) analyzer (mvpa2.clfs.meta.ProxyClassifierSensitivityAnalyzer attribute) (mvpa2.measures.base.ProxyClassifierSensitivityAnalyzer attribute) analyzers (mvpa2.measures.base.CombinedFeaturewiseMeasure attribute) anat_surf_to_gifti_image() (in module mvpa2.datasets.gifti) annot2rawniml() (in module mvpa2.support.nibabel.afni_niml_annot) API reference append() (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.base.learner.CompoundNode method) (mvpa2.base.node.CompoundNode method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) apply() (mvpa2.atlases.base.Linear method) (mvpa2.atlases.warehouse.Linear method) apply_affine3() (mvpa2.misc.surfing.volgeom.VolGeom method) ApplySelection (class in mvpa2.generators.resampling) args (mvpa2.measures.winner.partial attribute) argsort() (in module mvpa2.mappers.fx) array() (in module mvpa2.clfs.gpr) (in module mvpa2.misc.neighborhood) array_whereequal() (in module mvpa2.mappers.fx) (in module mvpa2.misc.support) ArrayCollectable (class in mvpa2.base.collections) (class in mvpa2.datasets.niml) as_char() (in module mvpa2.base.types) as_descrete_time() (mvpa2.datasets.eventrelated.Event method) (mvpa2.misc.data_generators.Event method) (mvpa2.misc.fsl.Event method) (mvpa2.misc.fsl.base.Event method) (mvpa2.misc.io.base.Event method) (mvpa2.misc.support.Event method) (mvpa2.testing.datasets.Event method) as_ls() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.libsvm.LSKernel method) (mvpa2.kernels.sg.Kernel method) as_np() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.NumpyKernel method) (mvpa2.kernels.base.NumpyKernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.np.NumpyKernel method) (mvpa2.kernels.sg.Kernel method)

as_pickable() (mvpa2.misc.surfing.volgeom.VolGeom method) as_raw_ls() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.libsvm.LSKernel method) (mvpa2.kernels.sg.Kernel method) as_raw_np() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.NumpyKernel method) (mvpa2.kernels.base.NumpyKernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.libsvm.LSKernel method) (mvpa2.kernels.np.NumpyKernel method) (mvpa2.kernels.sg.Kernel method) as_raw_sg() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.sg.Kernel method) (mvpa2.kernels.sg.SGKernel method) as_sg() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.sg.Kernel method) (mvpa2.kernels.sg.SGKernel method) as_string() (mvpa2.clfs.base.ConfusionMatrix method) (mvpa2.clfs.base.RegressionStatistics method) (mvpa2.clfs.transerror.ConfusionMatrix method) (mvpa2.clfs.transerror.RegressionStatistics method) (mvpa2.clfs.transerror.SummaryStatistics method) (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) asarray() (in module mvpa2.clfs.gpr) asobjarray() (in module mvpa2.base.hdf5) (in module mvpa2.base.types) (in module mvpa2.clfs.meta) (in module mvpa2.clfs.plr) (in module mvpa2.measures.base) assert_almost_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_approx_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_array_almost_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_array_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_array_lequal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_array_less() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_collections_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_datasets_almost_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_datasets_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_dict_keys_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_objectarray_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_reprstr_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_string_equal() (in module mvpa2.testing) (in module mvpa2.testing.tools) assert_warnings() (in module mvpa2.testing) (in module mvpa2.testing.tools) assign_conditionlabels() (in module mvpa2.datasets.eventrelated) assure (mvpa2.clfs.stats.AttributePermutator attribute) (mvpa2.generators.permutation.AttributePermutator attribute) astimezone() (mvpa2.base.report.datetime method) Atlas() (in module mvpa2.atlases) (in module mvpa2.atlases.warehouse) atlaslabeler attr (mvpa2.clfs.stats.AttributePermutator attribute) (mvpa2.generators.partition.Partitioner attribute) (mvpa2.generators.permutation.AttributePermutator attribute) attr_length (mvpa2.base.collections.UniformLengthCollection attribute) AttrDataset (class in mvpa2.base.dataset) (class in mvpa2.base.learner) (class in mvpa2.datasets.base) (class in mvpa2.datasets.gifti) (class in mvpa2.featsel.helpers) (class in mvpa2.measures.base) (class in mvpa2.misc.surfing.queryengine) attrfx (mvpa2.mappers.fx.FxMapper attribute) AttributeMap (class in mvpa2.clfs.base) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.meta) (class in mvpa2.datasets.formats) (class in mvpa2.measures.base) (class in mvpa2.misc.attrmap) (class in mvpa2.misc.plot) (class in mvpa2.misc.plot.base) AttributePermutator (class in mvpa2.clfs.stats) (class in mvpa2.generators.permutation) AttributesCollector (class in mvpa2.base.state) ATTRS (mvpa2.misc.cmdline.Option attribute) auc_error() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) aucs (mvpa2.clfs.transerror.ROCCurve attribute) auto_null_dist() (in module mvpa2.clfs.stats) (in module mvpa2.clfs.transerror) (in module mvpa2.measures.base) auto_train (mvpa2.algorithms.group_clusterthr.Learner attribute) (mvpa2.base.learner.Learner attribute) (mvpa2.clfs.base.Learner attribute) (mvpa2.mappers.base.Learner attribute) (mvpa2.mappers.skl_adaptor.Learner attribute) (mvpa2.measures.base.Learner attribute) autocorrelated_noise() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) aux_get() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) aux_keys() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) average_node_edge_length (mvpa2.support.nibabel.surf.Surface attribute) axis (mvpa2.mappers.fx.FxMapper attribute)

B

backports Balancer (class in mvpa2.generators.resampling) BaseAtlas (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) BaseCollection (in module mvpa2.base.state) basename() (in module mvpa2.base.verbosity) BaseSearchlight (class in mvpa2.measures.searchlight) BayesConfusionHypothesis (class in mvpa2.clfs.transerror) BestDetector (class in mvpa2.featsel.base) (class in mvpa2.featsel.helpers) (class in mvpa2.featsel.ifs) (class in mvpa2.featsel.rfe) bestdetector (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) bestindex (mvpa2.featsel.base.BestDetector attribute) (mvpa2.featsel.helpers.BestDetector attribute) (mvpa2.featsel.ifs.BestDetector attribute) (mvpa2.featsel.rfe.BestDetector attribute) between-subject classification bias (mvpa2.measures.base.StaticMeasure attribute) biases (mvpa2.clfs.smlr.SMLR attribute) (mvpa2.clfs.warehouse.SMLR attribute) (mvpa2.testing.clfs.SMLR attribute) BibTeX() (in module mvpa2.clfs.lars) (in module mvpa2.featsel.rfe) binary packages, [1] BinaryClassifier (class in mvpa2.clfs.meta) BinaryClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) BinaryFxNode (class in mvpa2.featsel.rfe) (class in mvpa2.mappers.fx) (class in mvpa2.measures.base) binomial_proportion_ci() (in module mvpa2.misc.stats) binomial_proportion_ci_from_bool() (in module mvpa2.misc.stats) BinomialProportionCI (class in mvpa2.mappers.fx)

Block-averaging, [1] BLR (class in mvpa2.clfs.blr) (class in mvpa2.clfs.warehouse) Bogus (class in mvpa2.kernels.sg) BoostedClassifier (class in mvpa2.clfs.meta) BoostedClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) borrowdoc() (in module mvpa2.base.collections) (in module mvpa2.base.dochelpers) (in module mvpa2.base.state) (in module mvpa2.mappers.base) (in module mvpa2.mappers.fx) (in module mvpa2.mappers.fxy) (in module mvpa2.mappers.staticprojection) (in module mvpa2.mappers.svd) (in module mvpa2.misc.neighborhood) borrowkwargs() (in module mvpa2.base.dochelpers) (in module mvpa2.base.info) (in module mvpa2.base.report) (in module mvpa2.mappers.detrend) (in module mvpa2.mappers.filters) (in module mvpa2.mappers.zscore) (in module mvpa2.measures.gnbsearchlight) (in module mvpa2.measures.nnsearchlight) (in module mvpa2.measures.searchlight) (in module mvpa2.misc.neighborhood) (in module mvpa2.misc.surfing.queryengine) BoxcarMapper (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.datasets.eventrelated) (class in mvpa2.mappers.boxcar) (class in mvpa2.misc.plot.erp) BrainVoyagerRTC (class in mvpa2.misc.bv) (class in mvpa2.misc.bv.base) build instructions building from source building on Windows BytesIO (class in mvpa2.support.nibabel.afni_niml)

C

C (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) CachedKernel (class in mvpa2.kernels) (class in mvpa2.kernels.base) CachedQueryEngine (class in mvpa2.misc.neighborhood) callback (mvpa2.measures.base.RepeatedMeasure attribute) canonical_filename() (in module mvpa2.support.nibabel.afni_suma_spec) cartesian_distance() (in module mvpa2.clfs.distance) (in module mvpa2.clfs.meta) (in module mvpa2.misc.neighborhood) cdf() (mvpa2.clfs.stats.AdaptiveRDist method) (mvpa2.clfs.stats.FixedNullDist method) (mvpa2.clfs.stats.MCNullDist method) (mvpa2.clfs.stats.Nonparametric method) (mvpa2.clfs.stats.NullDist method) CDist (class in mvpa2.measures.rsa) cdist() (in module mvpa2.measures.rsa) ceil() (in module mvpa2.base.dochelpers) (in module mvpa2.clfs.transerror) center_of_mass (mvpa2.support.nibabel.surf.Surface attribute) centroid (mvpa2.mappers.mdp_adaptor.PCAMapper attribute) cfg ChainLearner (class in mvpa2.base.learner) (class in mvpa2.measures.winner) ChainMapper (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.datasets.base) (class in mvpa2.datasets.cosmo) (class in mvpa2.mappers.base) (class in mvpa2.mappers.flatten) (class in mvpa2.measures.searchlight) (class in mvpa2.misc.surfing.volgeom) ChainNode (class in mvpa2.base.learner) (class in mvpa2.base.node) (class in mvpa2.mappers.base) (class in mvpa2.measures.winner) (class in mvpa2.misc.plot) (class in mvpa2.misc.plot.base) (class in mvpa2.viz) change_temporarily() (mvpa2.base.state.ConditionalAttributesCollection method) changelog channels (mvpa2.datasets.eep.EEPBin attribute) check_all_dependencies() (in module mvpa2.base.externals) CHECK_METHODS (mvpa2.misc.cmdline.Option attribute) check_range() (in module mvpa2.atlases.base) (in module mvpa2.atlases.warehouse) check_value() (mvpa2.misc.cmdline.Option method) check_values() (mvpa2.misc.cmdline.OptionParser method) chirp_linear() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) chisquare() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.stats) Chunk chunks (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) chunks_attr (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute) (mvpa2.mappers.zscore.ZScoreMapper attribute) circlearound_n2d() (mvpa2.misc.surfing.volsurf.VolumeBasedSurface method) (mvpa2.support.nibabel.surf.Surface method) citation Classifier, [1], [2] (class in mvpa2.clfs.base) (class in mvpa2.clfs.blr) (class in mvpa2.clfs.enet) (class in mvpa2.clfs.gda) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.knn) (class in mvpa2.clfs.lars) (class in mvpa2.clfs.mass) (class in mvpa2.clfs.meta) (class in mvpa2.clfs.plr) (class in mvpa2.clfs.ridge) (class in mvpa2.clfs.smlr) (class in mvpa2.testing.clfs) ClassifierCombiner (class in mvpa2.clfs.meta) ClassifierError (class in mvpa2.clfs.transerror) (class in mvpa2.featsel.rfe) ClassWithCollections (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.node) (class in mvpa2.base.state) (class in mvpa2.clfs.meta) (class in mvpa2.clfs.stats) (class in mvpa2.clfs.transerror) (class in mvpa2.featsel.helpers) (class in mvpa2.kernels.base) (class in mvpa2.misc.transformers) clean() (mvpa2.clfs.stats.MCNullDist method) cleanup() (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.sg.Kernel method) clear() (mvpa2.base.report.Report method) (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) clf (mvpa2.clfs.enet.Sensitivity attribute) (mvpa2.clfs.glmnet.Sensitivity attribute) (mvpa2.clfs.gnb.Sensitivity attribute) (mvpa2.clfs.gpr.Sensitivity attribute) (mvpa2.clfs.lars.Sensitivity attribute) (mvpa2.clfs.meta.ProxyClassifier attribute) (mvpa2.clfs.plr.Sensitivity attribute) (mvpa2.clfs.smlr.Sensitivity attribute) (mvpa2.clfs.transerror.ClassifierError attribute) (mvpa2.featsel.rfe.ClassifierError attribute) (mvpa2.featsel.rfe.ProxyClassifier attribute) (mvpa2.featsel.rfe.Sensitivity attribute) (mvpa2.measures.base.Sensitivity attribute) clfs (mvpa2.clfs.meta.BoostedClassifier attribute) (mvpa2.clfs.meta.TreeClassifier attribute) clone() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.testing.clfs.Classifier method)

close() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) closed (mvpa2.support.nibabel.afni_niml.BytesIO attribute) coarsen_chunks() (in module mvpa2.datasets.miscfx) (in module mvpa2.generators.partition) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) code swarm collect_nose_tests() (in module mvpa2.tests) collect_test_suites() (in module mvpa2.tests) collect_unit_tests() (in module mvpa2.tests) Collectable (class in mvpa2.base.attributes) (class in mvpa2.base.collections) (class in mvpa2.clfs.transerror) Collection (class in mvpa2.base.collections) (class in mvpa2.base.state) (class in mvpa2.datasets.cosmo) ColumnData (class in mvpa2.misc.bv) (class in mvpa2.misc.bv.base) (class in mvpa2.misc.fsl) (class in mvpa2.misc.fsl.base) (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) combinations (class in mvpa2.measures.rsa) combine() (mvpa2.base.report.datetime method) combine_left_right() (in module mvpa2.support.nibabel.afni_suma_spec) combined_analyzer (mvpa2.clfs.meta.BoostedClassifierSensitivityAnalyzer attribute) (mvpa2.measures.base.BoostedClassifierSensitivityAnalyzer attribute) CombinedClassifier (class in mvpa2.clfs.meta) CombinedFeatureSelection (class in mvpa2.featsel.base) CombinedFeaturewiseMeasure (class in mvpa2.measures.base) CombinedLearner (class in mvpa2.base.learner) CombinedMapper (class in mvpa2.mappers.base) CombinedNode (class in mvpa2.base.learner) (class in mvpa2.base.node) combiner (mvpa2.clfs.meta.CombinedClassifier attribute) command line, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17] CompoundLearner (class in mvpa2.base.learner) CompoundNode (class in mvpa2.base.learner) (class in mvpa2.base.node) CompoundOneWayAnova (class in mvpa2.measures.anova) compute() (mvpa2.clfs.transerror.SummaryStatistics method) (mvpa2.kernels.CachedKernel method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.PrecomputedKernel method) (mvpa2.kernels.base.CachedKernel method) (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.base.PrecomputedKernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.libsvm.LSKernel method) (mvpa2.kernels.sg.Kernel method) (mvpa2.kernels.sg.PrecomputedSGKernel method) compute_feature_scores() (in module mvpa2.algorithms.searchlight_hyperalignment) compute_gradient_log_marginal_likelihood() (mvpa2.clfs.gpr.GPR method) (mvpa2.clfs.warehouse.GPR method) compute_gradient_log_marginal_likelihood_logscale() (mvpa2.clfs.gpr.GPR method) (mvpa2.clfs.warehouse.GPR method) compute_lml_gradient() (mvpa2.clfs.gpr.SquaredExponentialKernel method) (mvpa2.clfs.warehouse.SquaredExponentialKernel method) (mvpa2.kernels.np.ConstantKernel method) (mvpa2.kernels.np.ExponentialKernel method) (mvpa2.kernels.np.SquaredExponentialKernel method) (mvpa2.measures.irelief.ExponentialKernel method) compute_lml_gradient_logscale() (mvpa2.clfs.gpr.SquaredExponentialKernel method) (mvpa2.clfs.warehouse.SquaredExponentialKernel method) (mvpa2.kernels.np.ConstantKernel method) (mvpa2.kernels.np.ExponentialKernel method) (mvpa2.kernels.np.SquaredExponentialKernel method) (mvpa2.measures.irelief.ExponentialKernel method) compute_log_marginal_likelihood() (mvpa2.clfs.blr.BLR method) (mvpa2.clfs.gpr.GPR method) (mvpa2.clfs.warehouse.BLR method) (mvpa2.clfs.warehouse.GPR method) compute_M_H() (mvpa2.measures.irelief.IterativeRelief method) (mvpa2.measures.irelief.IterativeRelief_Devel method) compute_ts_boxplot_stats() (in module mvpa2.misc.stats) computed() (mvpa2.clfs.similarity.Similarity method) (mvpa2.clfs.similarity.SingleDimensionSimilarity method) (mvpa2.clfs.similarity.StreamlineSimilarity method) (mvpa2.kernels.Kernel method) (mvpa2.kernels.base.Kernel method) (mvpa2.kernels.libsvm.Kernel method) (mvpa2.kernels.sg.Kernel method) concat_as (mvpa2.measures.base.RepeatedMeasure attribute) concat_ts_boxplot_stats() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) Conditional Attribute ConditionalAttribute (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.base.attributes) (class in mvpa2.base.learner) (class in mvpa2.base.node) (class in mvpa2.base.state) (class in mvpa2.clfs.base) (class in mvpa2.clfs.blr) (class in mvpa2.clfs.gda) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.knn) (class in mvpa2.clfs.mass) (class in mvpa2.clfs.meta) (class in mvpa2.clfs.plr) (class in mvpa2.clfs.smlr) (class in mvpa2.clfs.stats) (class in mvpa2.clfs.transerror) (class in mvpa2.featsel.base) (class in mvpa2.featsel.helpers) (class in mvpa2.featsel.ifs) (class in mvpa2.featsel.rfe) (class in mvpa2.kernels.np) (class in mvpa2.measures.base) (class in mvpa2.measures.searchlight) (class in mvpa2.misc.transformers) ConditionalAttributesCollection (class in mvpa2.base.state) config file ConfigManager (class in mvpa2.base) (class in mvpa2.base.config) configuration Confusion (class in mvpa2.clfs.transerror) confusion (mvpa2.clfs.transerror.ClassifierError attribute) (mvpa2.featsel.rfe.ClassifierError attribute) Confusion Matrix ConfusionBasedError (class in mvpa2.clfs.transerror) ConfusionMatrix (class in mvpa2.clfs.base) (class in mvpa2.clfs.transerror) ConfusionMatrixError (class in mvpa2.clfs.transerror) conjtransp() (mvpa2.algorithms.group_clusterthr.dok_matrix method) connected_components() (mvpa2.support.nibabel.surf.Surface method) connected_components_slow() (mvpa2.support.nibabel.surf.Surface method) CONST_ACTIONS (mvpa2.misc.cmdline.Option attribute) ConstantKernel (class in mvpa2.kernels.np) Constraint (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) Constraints (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) contains_ijk() (mvpa2.misc.surfing.volgeom.VolGeom method) contains_lin() (mvpa2.misc.surfing.volgeom.VolGeom method) contextmanager() (in module mvpa2.testing) (in module mvpa2.testing.tools) convert_value() (mvpa2.misc.cmdline.Option method) coo_matrix (class in mvpa2.algorithms.searchlight_hyperalignment) coordinates_to_box_indices() (mvpa2.support.nibabel.surf.Surface method) coordinates_to_grey_distance_mm() (mvpa2.misc.surfing.volsurf.VolSurf method) coordT (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) copy() (in module mvpa2.featsel.ifs) (in module mvpa2.featsel.rfe) (in module mvpa2.misc.support) (mvpa2.algorithms.group_clusterthr.Counter method) (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.base.collections.Collection method) (mvpa2.base.collections.UniformLengthCollection method) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.base.state.Collection method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.base.HollowSamples method) (mvpa2.datasets.cosmo.Collection method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.measures.searchlight.defaultdict method) (mvpa2.misc.surfing.queryengine.AttrDataset method) (mvpa2.testing.datasets.HollowSamples method) corouge() (in module mvpa2.clfs.distance) corr_error() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) corr_error_prob() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) CorrCoef (class in mvpa2.measures.corrcoef) correlation() (in module mvpa2.misc.errorfx) CorrStability (class in mvpa2.measures.corrstability) cosmo_dataset() (in module mvpa2.datasets.cosmo) CosmoQueryEngine (class in mvpa2.datasets.cosmo) CosmoSearchlight (class in mvpa2.datasets.cosmo) count_nonzero() (mvpa2.algorithms.group_clusterthr.dok_matrix method) Counter (class in mvpa2.algorithms.group_clusterthr) Courses cov (mvpa2.clfs.gda.GDA attribute) Cross-validation, [1] cross-validation, [1], [2], [3], [4] crossval CrossValidation (class in mvpa2.measures.base) csc_matrix (class in mvpa2.algorithms.searchlight_hyperalignment) ctime() (mvpa2.base.report.datetime method) curvature_from_any() (in module mvpa2.misc.plot.flat_surf) CustomKernel (class in mvpa2.kernels) (class in mvpa2.kernels.base) CustomPartitioner (class in mvpa2.generators.partition) CustomSGKernel (class in mvpa2.kernels.sg)

D

DAE (in module mvpa2.base.dataset) data (mvpa2.datasets.eep.DataReader attribute) (mvpa2.misc.io.DataReader attribute) (mvpa2.misc.io.base.DataReader attribute) datameasure (mvpa2.datasets.cosmo.Searchlight attribute) (mvpa2.measures.searchlight.Searchlight attribute) dataobj (mvpa2.misc.plot.lightbox.SpatialImage attribute) DataReader (class in mvpa2.datasets.eep) (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) Dataset (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.clfs.base) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.knn) (class in mvpa2.clfs.lars) (class in mvpa2.clfs.meta) (class in mvpa2.clfs.plr) (class in mvpa2.clfs.smlr) (class in mvpa2.clfs.stats) (class in mvpa2.clfs.transerror) (class in mvpa2.datasets.base) (class in mvpa2.datasets.cosmo) (class in mvpa2.datasets.eeglab) (class in mvpa2.datasets.eep) (class in mvpa2.datasets.eventrelated) (class in mvpa2.datasets.formats) (class in mvpa2.datasets.gifti) (class in mvpa2.datasets.miscfx) (class in mvpa2.datasets.mri) (class in mvpa2.datasets.niml) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.fx) (class in mvpa2.mappers.fxy) (class in mvpa2.mappers.glm) (class in mvpa2.mappers.shape) (class in mvpa2.mappers.zscore) (class in mvpa2.measures.anova) (class in mvpa2.measures.base) (class in mvpa2.measures.corrcoef) (class in mvpa2.measures.irelief) (class in mvpa2.measures.noiseperturbation) (class in mvpa2.measures.rsa) (class in mvpa2.measures.searchlight) (class in mvpa2.measures.statsmodels_adaptor) (class in mvpa2.measures.winner) (class in mvpa2.misc.data_generators) (class in mvpa2.misc.plot.flat_surf) (class in mvpa2.testing.clfs) (class in mvpa2.testing.datasets) Dataset attribute Dataset concepts Dataset Database Dataset layout DatasetAttribute (class in mvpa2.base.collections) DatasetAttributeExtractor (class in mvpa2.base.dataset) (class in mvpa2.mappers.mdp_adaptor) DatasetAttributesCollection (class in mvpa2.base.collections) (class in mvpa2.base.dataset) (class in mvpa2.base.node) (class in mvpa2.datasets.niml) datasetmethod() (in module mvpa2.base.dataset) (in module mvpa2.datasets.miscfx) date() (mvpa2.base.report.datetime method) datetime (class in mvpa2.base.report) dcorcoef() (in module mvpa2.misc.dcov) dCOV() (in module mvpa2.misc.dcov) Debian, [1] debug, [1] DebugLogger (class in mvpa2.base) (class in mvpa2.base.verbosity) decode_escape() (in module mvpa2.support.nibabel.afni_niml) Decoding deepcopy() (in module mvpa2.algorithms.hyperalignment) (in module mvpa2.clfs.base) (in module mvpa2.mappers.skl_adaptor) (in module mvpa2.measures.noiseperturbation) (in module mvpa2.misc.support) default (mvpa2.algorithms.group_clusterthr.Parameter attribute) (mvpa2.algorithms.hyperalignment.Parameter attribute) (mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute) (mvpa2.base.param.Parameter attribute) (mvpa2.clfs.base.Parameter attribute) (mvpa2.clfs.gda.Parameter attribute) (mvpa2.clfs.glmnet.Parameter attribute) (mvpa2.clfs.gnb.Parameter attribute) (mvpa2.clfs.gpr.Parameter attribute) (mvpa2.clfs.meta.Parameter attribute) (mvpa2.clfs.smlr.Parameter attribute) (mvpa2.kernels.base.Parameter attribute) (mvpa2.kernels.libsvm.Parameter attribute) (mvpa2.kernels.np.Parameter attribute) (mvpa2.kernels.sg.Parameter attribute) (mvpa2.mappers.detrend.Parameter attribute) (mvpa2.mappers.filters.Parameter attribute) (mvpa2.mappers.fx.Parameter attribute) (mvpa2.mappers.glm.Parameter attribute) (mvpa2.mappers.procrustean.Parameter attribute) (mvpa2.measures.rsa.Parameter attribute)

default_factory (mvpa2.measures.searchlight.defaultdict attribute) defaultdict (class in mvpa2.measures.searchlight) deprecated (class in mvpa2.clfs.distance) (class in mvpa2.generators.partition) (class in mvpa2.generators.permutation) (class in mvpa2.misc.surfing.volume_mask_dict) descr (mvpa2.algorithms.hyperalignment.ClassWithCollections attribute) (mvpa2.algorithms.searchlight_hyperalignment.ClassWithCollections attribute) (mvpa2.base.node.ClassWithCollections attribute) (mvpa2.base.state.ClassWithCollections attribute) (mvpa2.clfs.meta.ClassWithCollections attribute) (mvpa2.clfs.stats.ClassWithCollections attribute) (mvpa2.clfs.transerror.ClassWithCollections attribute) (mvpa2.featsel.helpers.ClassWithCollections attribute) (mvpa2.kernels.base.ClassWithCollections attribute) (mvpa2.misc.transformers.ClassWithCollections attribute) describe descriptions (mvpa2.clfs.warehouse.Warehouse attribute) design2labels() (in module mvpa2.misc.io) (in module mvpa2.misc.io.base) destroy() (mvpa2.misc.cmdline.OptionGroup method) (mvpa2.misc.cmdline.OptionParser method) detrending development development snapshot dfx (mvpa2.clfs.knn.kNN attribute) (mvpa2.clfs.warehouse.kNN attribute) (mvpa2.testing.clfs.kNN attribute) diagonal() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) dijkstra_distance() (mvpa2.support.nibabel.surf.Surface method) dijkstra_shortest_path() (mvpa2.support.nibabel.surf.Surface method) dijkstra_shortest_path_visiting() (mvpa2.support.nibabel.surf.Surface method) dirname() (in module mvpa2.base.verbosity) disable() (mvpa2.base.state.ConditionalAttributesCollection method) disable_interspersed_args() (mvpa2.misc.cmdline.OptionParser method) disc_surface_queryengine() (in module mvpa2.misc.surfing.queryengine) disc_voxel_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method) disc_voxel_indices_and_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method) distance (mvpa2.atlases.base.ReferencesAtlas attribute) (mvpa2.atlases.ReferencesAtlas attribute) (mvpa2.atlases.warehouse.ReferencesAtlas attribute) distance() (in module mvpa2.misc.surfing.volgeom) distance_func (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute) (mvpa2.measures.gnbsearchlight.Sphere attribute) (mvpa2.measures.nnsearchlight.Sphere attribute) (mvpa2.measures.searchlight.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) (mvpa2.misc.surfing.volgeom.Sphere attribute) DistPValue (class in mvpa2.misc.transformers) dists() (mvpa2.clfs.stats.MCNullDist method) (mvpa2.clfs.stats.NullDist method) Documentation overview Doi() (in module mvpa2) (in module mvpa2.algorithms.group_clusterthr) (in module mvpa2.algorithms.hyperalignment) (in module mvpa2.algorithms.searchlight_hyperalignment) (in module mvpa2.clfs.lars) (in module mvpa2.clfs.smlr) (in module mvpa2.clfs.transerror) (in module mvpa2.featsel.rfe) (in module mvpa2.measures.searchlight) dok_matrix (class in mvpa2.algorithms.group_clusterthr) dot() (in module mvpa2.clfs.gda) (in module mvpa2.clfs.gnb) double_gamma_hrf() (in module mvpa2.misc.data_generators) (in module mvpa2.misc.fx) (in module mvpa2.testing.datasets) dset2rawniml() (in module mvpa2.support.nibabel.afni_niml_dset) dshape (mvpa2.datasets.base.StaticFeatureSelection attribute) (mvpa2.datasets.cosmo.StaticFeatureSelection attribute) (mvpa2.featsel.base.StaticFeatureSelection attribute) (mvpa2.featsel.ifs.StaticFeatureSelection attribute) (mvpa2.mappers.flatten.StaticFeatureSelection attribute) (mvpa2.measures.searchlight.StaticFeatureSelection attribute) dst() (mvpa2.base.report.datetime method) dt (mvpa2.datasets.eep.EEPBin attribute) dtype (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute) (mvpa2.mappers.zscore.ZScoreMapper attribute) dual_gaussian() (in module mvpa2.misc.fx) dual_positive_gaussian() (in module mvpa2.misc.fx) dumb_feature_binary_dataset() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) dumb_feature_dataset() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) dump durations (mvpa2.misc.fsl.base.FslEV3 attribute) (mvpa2.misc.fsl.FslEV3 attribute)

E

edge2face (mvpa2.support.nibabel.surf.Surface attribute) eeglab_dataset() (in module mvpa2.datasets.eeglab) eep_dataset() (in module mvpa2.datasets.eep) EEPBin (class in mvpa2.datasets.eep) element_sizes (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute) (mvpa2.measures.gnbsearchlight.Sphere attribute) (mvpa2.measures.nnsearchlight.Sphere attribute) (mvpa2.measures.searchlight.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) (mvpa2.misc.surfing.volgeom.Sphere attribute) elements() (mvpa2.algorithms.group_clusterthr.Counter method) ElementSelector (class in mvpa2.featsel.helpers) (class in mvpa2.mappers.svd) eliminate_zeros() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) enable() (mvpa2.base.state.ConditionalAttributesCollection method) enable_interspersed_args() (mvpa2.misc.cmdline.OptionParser method) enabled (mvpa2.algorithms.hyperalignment.ConditionalAttribute attribute) (mvpa2.base.attributes.ConditionalAttribute attribute) (mvpa2.base.learner.ConditionalAttribute attribute) (mvpa2.base.node.ConditionalAttribute attribute) (mvpa2.base.state.ConditionalAttribute attribute) (mvpa2.base.state.ConditionalAttributesCollection attribute) (mvpa2.clfs.base.ConditionalAttribute attribute) (mvpa2.clfs.blr.ConditionalAttribute attribute) (mvpa2.clfs.gda.ConditionalAttribute attribute) (mvpa2.clfs.gnb.ConditionalAttribute attribute) (mvpa2.clfs.gpr.ConditionalAttribute attribute) (mvpa2.clfs.knn.ConditionalAttribute attribute) (mvpa2.clfs.mass.ConditionalAttribute attribute) (mvpa2.clfs.meta.ConditionalAttribute attribute) (mvpa2.clfs.plr.ConditionalAttribute attribute) (mvpa2.clfs.smlr.ConditionalAttribute attribute) (mvpa2.clfs.stats.ConditionalAttribute attribute) (mvpa2.clfs.transerror.ConditionalAttribute attribute) (mvpa2.featsel.base.ConditionalAttribute attribute) (mvpa2.featsel.helpers.ConditionalAttribute attribute) (mvpa2.featsel.ifs.ConditionalAttribute attribute) (mvpa2.featsel.rfe.ConditionalAttribute attribute) (mvpa2.kernels.np.ConditionalAttribute attribute) (mvpa2.measures.base.ConditionalAttribute attribute) (mvpa2.measures.searchlight.ConditionalAttribute attribute) (mvpa2.misc.transformers.ConditionalAttribute attribute) encode_escape() (in module mvpa2.support.nibabel.afni_niml) ENET (class in mvpa2.clfs.enet) ENETWeights (class in mvpa2.clfs.enet) enhanced_doc_string() (in module mvpa2.atlases.base) (in module mvpa2.atlases.fsl) (in module mvpa2.atlases.warehouse) (in module mvpa2.base.dochelpers) (in module mvpa2.base.state) (in module mvpa2.clfs.transerror) (in module mvpa2.mappers.projection) (in module mvpa2.measures.base) (in module mvpa2.misc.io.base) EnsureBool (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) EnsureChoice (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.gda) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.fx) (class in mvpa2.mappers.procrustean) (class in mvpa2.measures.rsa) EnsureDType (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) EnsureFloat (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.smlr) (class in mvpa2.kernels.np) (class in mvpa2.mappers.fx) EnsureInt (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.fx) EnsureListOf (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.kernels.np) (class in mvpa2.mappers.fx) EnsureNone (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.fx)

EnsureRange (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) EnsureStr (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) EnsureTupleOf (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.constraints) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.smlr) (class in mvpa2.mappers.fx) environment variable MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS Epoch eq_() (in module mvpa2.testing) (in module mvpa2.testing.tools) equal_default (mvpa2.algorithms.group_clusterthr.Parameter attribute) (mvpa2.algorithms.hyperalignment.Parameter attribute) (mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute) (mvpa2.base.param.Parameter attribute) (mvpa2.clfs.base.Parameter attribute) (mvpa2.clfs.gda.Parameter attribute) (mvpa2.clfs.glmnet.Parameter attribute) (mvpa2.clfs.gnb.Parameter attribute) (mvpa2.clfs.gpr.Parameter attribute) (mvpa2.clfs.meta.Parameter attribute) (mvpa2.clfs.smlr.Parameter attribute) (mvpa2.kernels.base.Parameter attribute) (mvpa2.kernels.libsvm.Parameter attribute) (mvpa2.kernels.np.Parameter attribute) (mvpa2.kernels.sg.Parameter attribute) (mvpa2.mappers.detrend.Parameter attribute) (mvpa2.mappers.filters.Parameter attribute) (mvpa2.mappers.fx.Parameter attribute) (mvpa2.mappers.glm.Parameter attribute) (mvpa2.mappers.procrustean.Parameter attribute) (mvpa2.measures.rsa.Parameter attribute) error (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.base.RegressionStatistics attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) (mvpa2.clfs.transerror.RegressionStatistics attribute) (mvpa2.clfs.transerror.SummaryStatistics attribute) error() (in module mvpa2.base) (mvpa2.misc.cmdline.OptionParser method) errorfx (mvpa2.measures.base.CrossValidation attribute) (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute) (mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute) escape_xml() (in module mvpa2.base.report) eta_string() (in module mvpa2.base.progress) euclidean_distance() (mvpa2.support.nibabel.surf.Surface method) Event (class in mvpa2.datasets.eventrelated) (class in mvpa2.misc.data_generators) (class in mvpa2.misc.fsl) (class in mvpa2.misc.fsl.base) (class in mvpa2.misc.io.base) (class in mvpa2.misc.support) (class in mvpa2.testing.datasets) event-related fMRI, [1], [2] eventrelated_dataset() (in module mvpa2.datasets.eventrelated) events2sample_attr() (in module mvpa2.datasets.eventrelated) example examples ExcludeTargetsCombinationsPartitioner (class in mvpa2.generators.partition) exec Exemplar exists() (in module mvpa2.base.dochelpers) (in module mvpa2.base.externals) (in module mvpa2.kernels.sg) exit() (mvpa2.misc.cmdline.OptionParser method) expand_contraint_spec() (in module mvpa2.algorithms.hyperalignment) (in module mvpa2.algorithms.searchlight_hyperalignment) (in module mvpa2.base.constraints) (in module mvpa2.base.param) (in module mvpa2.clfs.glmnet) (in module mvpa2.clfs.smlr) (in module mvpa2.mappers.fx) expand_prog_name() (mvpa2.misc.cmdline.OptionParser method) ExponentialKernel (class in mvpa2.kernels.np) (class in mvpa2.measures.irelief) extent (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) (mvpa2.misc.fsl.melodic.MelodicResults attribute) extract_boxcar_event_samples() (in module mvpa2.datasets.eventrelated)

F

fa (mvpa2.datasets.cosmo.CosmoQueryEngine attribute) face_areas (mvpa2.support.nibabel.surf.Surface attribute) face_edge_length (mvpa2.support.nibabel.surf.Surface attribute) face_normals (mvpa2.support.nibabel.surf.Surface attribute) faces (mvpa2.support.nibabel.surf.Surface attribute) factor_names (mvpa2.mappers.flatten.ProductFlattenMapper attribute) factor_values (mvpa2.mappers.flatten.ProductFlattenMapper attribute) FactorialPartitioner (class in mvpa2.generators.partition) Feature Feature attribute Feature Selection feature selection feature_id2linear_voxel_ids() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) feature_id2nearest_vertex_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) feature_ids (mvpa2.clfs.enet.Sensitivity attribute) (mvpa2.clfs.glmnet.Sensitivity attribute) (mvpa2.clfs.gnb.Sensitivity attribute) (mvpa2.clfs.gpr.Sensitivity attribute) (mvpa2.clfs.lars.Sensitivity attribute) (mvpa2.clfs.plr.Sensitivity attribute) (mvpa2.clfs.smlr.Sensitivity attribute) (mvpa2.featsel.rfe.Sensitivity attribute) (mvpa2.measures.base.Sensitivity attribute) feature_loser_measure() (in module mvpa2.measures.winner) feature_winner_measure() (in module mvpa2.measures.winner) FeatureAttribute (class in mvpa2.base.collections) FeatureAttributesCollection (class in mvpa2.base.collections) (class in mvpa2.base.dataset) (class in mvpa2.base.node) (class in mvpa2.datasets.gifti) (class in mvpa2.datasets.niml) (class in mvpa2.generators.base) FeatureSelection (class in mvpa2.featsel.base) FeatureSelectionClassifier (class in mvpa2.clfs.meta) (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.rfe) FeatureSelectionClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) FeatureSelectionHyperalignment (class in mvpa2.algorithms.searchlight_hyperalignment) FeaturewiseMeasure (class in mvpa2.measures.anova) (class in mvpa2.measures.base) (class in mvpa2.measures.corrcoef) (class in mvpa2.measures.corrstability) (class in mvpa2.measures.irelief) (class in mvpa2.measures.noiseperturbation) (class in mvpa2.measures.statsmodels_adaptor) (class in mvpa2.testing.clfs) Fedora felements (mvpa2.clfs.warehouse.FractionTailSelector attribute) (mvpa2.featsel.base.FractionTailSelector attribute) (mvpa2.featsel.helpers.FractionTailSelector attribute) (mvpa2.featsel.rfe.FractionTailSelector attribute) fft_resample() (in module mvpa2.mappers.filters) FFTResampleMapper (class in mvpa2.mappers.filters) figure() (mvpa2.base.report.Report method) figures() (mvpa2.base.report.Report method) filename2vertices_faces_metadata() (in module mvpa2.support.nibabel.surf_gifti) fill() (mvpa2.base.state.TextWrapper method) fill_nonfinites() (in module mvpa2.misc.plot.scatter) filtfilt() (in module mvpa2.mappers.filters) find() (mvpa2.atlases.base.LabelsLevel method) (mvpa2.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.fsl.FSLProbabilisticAtlas method) (mvpa2.atlases.fsl.LabelsLevel method) (mvpa2.atlases.warehouse.FSLProbabilisticAtlas method) (mvpa2.atlases.warehouse.LabelsLevel method) find_attribute_node() (in module mvpa2.support.nibabel.afni_niml) find_collection() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) find_events() (in module mvpa2.datasets.eventrelated) find_file() (in module mvpa2.support.nibabel.afni_suma_spec) find_surface_from_state() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) first_axis_mean() (in module mvpa2.clfs.meta) (in module mvpa2.misc.transformers) first_axis_sum_not_zero() (in module mvpa2.misc.transformers) fit() (mvpa2.clfs.stats.AdaptiveNullDist method) (mvpa2.clfs.stats.FixedNullDist method) (mvpa2.clfs.stats.MCNullDist method) (mvpa2.clfs.stats.Nonparametric static method) (mvpa2.clfs.stats.NullDist method) (mvpa2.clfs.stats.rv_semifrozen method) fit2histogram() (in module mvpa2.misc.fx) fit_event_hrf_model() (in module mvpa2.datasets.eventrelated) FixedErrorThresholdStopCrit (class in mvpa2.featsel.helpers) FixedNElementTailSelector (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.helpers) (class in mvpa2.featsel.ifs) FixedNullDist (class in mvpa2.clfs.stats) flat_surface2grid_mask() (in module mvpa2.misc.plot.flat_surf) flat_surface2xy() (in module mvpa2.misc.plot.flat_surf) flat_surface_curvature2rgba() (in module mvpa2.misc.plot.flat_surf) flat_surface_data2rgba() (in module mvpa2.misc.plot.flat_surf) FlatSurfacePlotter (class in mvpa2.misc.plot.flat_surf) FlattenMapper (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.datasets.base) (class in mvpa2.datasets.cosmo) (class in mvpa2.datasets.eeglab) (class in mvpa2.datasets.eventrelated) (class in mvpa2.datasets.mri) (class in mvpa2.mappers.flatten) floor() (in module mvpa2.featsel.helpers) flowbreak() (mvpa2.base.report.Report method) flush() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) fmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) fMRI fmri_dataset() (in module mvpa2.datasets.mri) force_train (mvpa2.algorithms.group_clusterthr.Learner attribute) (mvpa2.base.learner.Learner attribute) (mvpa2.clfs.base.Learner attribute) (mvpa2.mappers.base.Learner attribute) (mvpa2.mappers.skl_adaptor.Learner attribute) (mvpa2.measures.base.Learner attribute) format (mvpa2.algorithms.group_clusterthr.dok_matrix attribute) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix attribute) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix attribute) format_epilog() (mvpa2.misc.cmdline.OptionParser method) format_help() (mvpa2.misc.cmdline.OptionGroup method) (mvpa2.misc.cmdline.OptionParser method) format_option_help() (mvpa2.misc.cmdline.OptionParser method) forward() (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.Mapper method) (mvpa2.mappers.boxcar.Mapper method) (mvpa2.mappers.detrend.Mapper method) (mvpa2.mappers.filters.Mapper method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.flatten.Mapper method) (mvpa2.mappers.fx.Mapper method) (mvpa2.mappers.fxy.Mapper method) (mvpa2.mappers.glm.Mapper method) (mvpa2.mappers.mdp_adaptor.Mapper method) (mvpa2.mappers.projection.Mapper method) (mvpa2.mappers.shape.Mapper method) (mvpa2.mappers.skl_adaptor.Mapper method) (mvpa2.mappers.slicing.Mapper method) (mvpa2.mappers.som.Mapper method) (mvpa2.mappers.wavelet.Mapper method) (mvpa2.mappers.zscore.Mapper method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.misc.surfing.volgeom.ChainMapper method)

forward1() (mvpa2.algorithms.benchmarks.hyperalignment.BoxcarMapper method) (mvpa2.algorithms.benchmarks.hyperalignment.IdentityMapper method) (mvpa2.algorithms.group_clusterthr.IdentityMapper method) (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.datasets.eventrelated.BoxcarMapper method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.IdentityMapper method) (mvpa2.mappers.base.Mapper method) (mvpa2.mappers.boxcar.BoxcarMapper method) (mvpa2.mappers.boxcar.Mapper method) (mvpa2.mappers.detrend.Mapper method) (mvpa2.mappers.filters.Mapper method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.flatten.Mapper method) (mvpa2.mappers.fx.Mapper method) (mvpa2.mappers.fxy.Mapper method) (mvpa2.mappers.glm.Mapper method) (mvpa2.mappers.mdp_adaptor.Mapper method) (mvpa2.mappers.projection.Mapper method) (mvpa2.mappers.shape.Mapper method) (mvpa2.mappers.skl_adaptor.Mapper method) (mvpa2.mappers.slicing.Mapper method) (mvpa2.mappers.som.Mapper method) (mvpa2.mappers.wavelet.Mapper method) (mvpa2.mappers.zscore.Mapper method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.misc.plot.erp.BoxcarMapper method) (mvpa2.misc.surfing.volgeom.ChainMapper method) FractionTailSelector (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.base) (class in mvpa2.featsel.helpers) (class in mvpa2.featsel.rfe) free software friedmanchisquare() (in module mvpa2.clfs.transerror) from_any() (in module mvpa2.datasets.cosmo) (in module mvpa2.datasets.niml) (in module mvpa2.misc.surfing.surf_voxel_selection) (in module mvpa2.misc.surfing.volgeom) (in module mvpa2.misc.surfing.volume_mask_dict) (in module mvpa2.support.nibabel.afni_niml_dset) (in module mvpa2.support.nibabel.afni_niml_roi) (in module mvpa2.support.nibabel.afni_suma_1d) (in module mvpa2.support.nibabel.afni_suma_spec) (in module mvpa2.support.nibabel.surf) from_channeltimeseries() (mvpa2.algorithms.group_clusterthr.Dataset class method) (mvpa2.algorithms.hyperalignment.Dataset class method) (mvpa2.clfs.base.Dataset class method) (mvpa2.clfs.glmnet.Dataset class method) (mvpa2.clfs.gnb.Dataset class method) (mvpa2.clfs.gpr.Dataset class method) (mvpa2.clfs.knn.Dataset class method) (mvpa2.clfs.lars.Dataset class method) (mvpa2.clfs.meta.Dataset class method) (mvpa2.clfs.plr.Dataset class method) (mvpa2.clfs.smlr.Dataset class method) (mvpa2.clfs.stats.Dataset class method) (mvpa2.clfs.transerror.Dataset class method) (mvpa2.datasets.base.Dataset class method) (mvpa2.datasets.cosmo.Dataset class method) (mvpa2.datasets.eeglab.Dataset class method) (mvpa2.datasets.eep.Dataset class method) (mvpa2.datasets.eventrelated.Dataset class method) (mvpa2.datasets.formats.Dataset class method) (mvpa2.datasets.gifti.Dataset class method) (mvpa2.datasets.miscfx.Dataset class method) (mvpa2.datasets.mri.Dataset class method) (mvpa2.datasets.niml.Dataset class method) (mvpa2.mappers.filters.Dataset class method) (mvpa2.mappers.fx.Dataset class method) (mvpa2.mappers.fxy.Dataset class method) (mvpa2.mappers.glm.Dataset class method) (mvpa2.mappers.shape.Dataset class method) (mvpa2.mappers.zscore.Dataset class method) (mvpa2.measures.anova.Dataset class method) (mvpa2.measures.base.Dataset class method) (mvpa2.measures.corrcoef.Dataset class method) (mvpa2.measures.irelief.Dataset class method) (mvpa2.measures.noiseperturbation.Dataset class method) (mvpa2.measures.rsa.Dataset class method) (mvpa2.measures.searchlight.Dataset class method) (mvpa2.measures.statsmodels_adaptor.Dataset class method) (mvpa2.measures.winner.Dataset class method) (mvpa2.misc.data_generators.Dataset class method) (mvpa2.misc.plot.flat_surf.Dataset class method) (mvpa2.testing.clfs.Dataset class method) (mvpa2.testing.datasets.Dataset class method) from_hdf5() (mvpa2.base.dataset.AttrDataset class method) (mvpa2.base.learner.AttrDataset class method) (mvpa2.datasets.base.AttrDataset class method) (mvpa2.datasets.gifti.AttrDataset class method) (mvpa2.featsel.helpers.AttrDataset class method) (mvpa2.measures.base.AttrDataset class method) (mvpa2.misc.surfing.queryengine.AttrDataset class method) from_image() (mvpa2.misc.plot.lightbox.SpatialImage class method) from_lightsvm_format() (in module mvpa2.datasets.formats) from_mat() (mvpa2.datasets.cosmo.CosmoQueryEngine class method) from_niml() (in module mvpa2.datasets.niml) from_npz() (mvpa2.base.dataset.AttrDataset class method) (mvpa2.base.learner.AttrDataset class method) (mvpa2.datasets.base.AttrDataset class method) (mvpa2.datasets.gifti.AttrDataset class method) (mvpa2.featsel.helpers.AttrDataset class method) (mvpa2.measures.base.AttrDataset class method) (mvpa2.misc.surfing.queryengine.AttrDataset class method) from_volume() (in module mvpa2.misc.surfing.volsurf) from_wizard() (mvpa2.algorithms.group_clusterthr.Dataset class method) (mvpa2.algorithms.hyperalignment.Dataset class method) (mvpa2.clfs.base.Dataset class method) (mvpa2.clfs.glmnet.Dataset class method) (mvpa2.clfs.gnb.Dataset class method) (mvpa2.clfs.gpr.Dataset class method) (mvpa2.clfs.knn.Dataset class method) (mvpa2.clfs.lars.Dataset class method) (mvpa2.clfs.meta.Dataset class method) (mvpa2.clfs.plr.Dataset class method) (mvpa2.clfs.smlr.Dataset class method) (mvpa2.clfs.stats.Dataset class method) (mvpa2.clfs.transerror.Dataset class method) (mvpa2.datasets.base.Dataset class method) (mvpa2.datasets.cosmo.Dataset class method) (mvpa2.datasets.eeglab.Dataset class method) (mvpa2.datasets.eep.Dataset class method) (mvpa2.datasets.eventrelated.Dataset class method) (mvpa2.datasets.formats.Dataset class method) (mvpa2.datasets.gifti.Dataset class method) (mvpa2.datasets.miscfx.Dataset class method) (mvpa2.datasets.mri.Dataset class method) (mvpa2.datasets.niml.Dataset class method) (mvpa2.mappers.filters.Dataset class method) (mvpa2.mappers.fx.Dataset class method) (mvpa2.mappers.fxy.Dataset class method) (mvpa2.mappers.glm.Dataset class method) (mvpa2.mappers.shape.Dataset class method) (mvpa2.mappers.zscore.Dataset class method) (mvpa2.measures.anova.Dataset class method) (mvpa2.measures.base.Dataset class method) (mvpa2.measures.corrcoef.Dataset class method) (mvpa2.measures.irelief.Dataset class method) (mvpa2.measures.noiseperturbation.Dataset class method) (mvpa2.measures.rsa.Dataset class method) (mvpa2.measures.searchlight.Dataset class method) (mvpa2.measures.statsmodels_adaptor.Dataset class method) (mvpa2.measures.winner.Dataset class method) (mvpa2.misc.data_generators.Dataset class method) (mvpa2.misc.plot.flat_surf.Dataset class method) (mvpa2.testing.clfs.Dataset class method) (mvpa2.testing.datasets.Dataset class method) from_xml() (mvpa2.atlases.base.Label static method) (mvpa2.atlases.base.LabelsLevel static method) (mvpa2.atlases.base.Level static method) (mvpa2.atlases.base.ReferencesLevel static method) (mvpa2.atlases.fsl.LabelsLevel static method) (mvpa2.atlases.warehouse.Label static method) (mvpa2.atlases.warehouse.LabelsLevel static method) (mvpa2.atlases.warehouse.Level static method) (mvpa2.atlases.warehouse.ReferencesLevel static method) fromkeys() (mvpa2.algorithms.group_clusterthr.Counter class method) fromtimestamp() (mvpa2.base.report.datetime method) fselector (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) FSL, [1] FSLAtlas (class in mvpa2.atlases.fsl) (class in mvpa2.atlases.warehouse) FslEV3 (class in mvpa2.misc.fsl) (class in mvpa2.misc.fsl.base) FslGLMDesign (class in mvpa2.misc.fsl) (class in mvpa2.misc.fsl.base) FSLLabelsAtlas (class in mvpa2.atlases.fsl) (class in mvpa2.atlases.warehouse) FSLProbabilisticAtlas (class in mvpa2.atlases) (class in mvpa2.atlases.fsl) (class in mvpa2.atlases.warehouse) func (mvpa2.measures.winner.partial attribute) fx (mvpa2.mappers.fx.FxMapper attribute) (mvpa2.mappers.fxy.FxyMapper attribute) fxargs (mvpa2.mappers.fx.FxMapper attribute) FxMapper (class in mvpa2.mappers.fx) FxyMapper (class in mvpa2.mappers.fxy)

G

GDA (class in mvpa2.clfs.gda) Generalization GeneralizedLinearKernel (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.np) generate() (mvpa2.algorithms.benchmarks.hyperalignment.Splitter method) (mvpa2.base.learner.CompoundNode method) (mvpa2.base.learner.Node method) (mvpa2.base.node.CompoundNode method) (mvpa2.base.node.Node method) (mvpa2.clfs.meta.Splitter method) (mvpa2.clfs.stats.AttributePermutator method) (mvpa2.clfs.transerror.Node method) (mvpa2.featsel.rfe.Repeater method) (mvpa2.featsel.rfe.Splitter method) (mvpa2.generators.base.Node method) (mvpa2.generators.base.Repeater method) (mvpa2.generators.base.Sifter method) (mvpa2.generators.partition.ExcludeTargetsCombinationsPartitioner method) (mvpa2.generators.partition.FactorialPartitioner method) (mvpa2.generators.partition.Node method) (mvpa2.generators.partition.Partitioner method) (mvpa2.generators.permutation.AttributePermutator method) (mvpa2.generators.permutation.Node method) (mvpa2.generators.resampling.Balancer method) (mvpa2.generators.resampling.Node method) (mvpa2.generators.splitters.Node method) (mvpa2.generators.splitters.Splitter method) (mvpa2.mappers.filters.Splitter method) (mvpa2.mappers.fx.Node method) (mvpa2.mappers.slicing.Node method) (mvpa2.measures.base.Node method) (mvpa2.measures.base.Splitter method) (mvpa2.misc.plot.Splitter method) (mvpa2.misc.plot.base.Splitter method) (mvpa2.viz.Splitter method) generate_bar() (in module mvpa2.support.nibabel.surf) generate_cube() (in module mvpa2.support.nibabel.surf) generate_plane() (in module mvpa2.support.nibabel.surf) generate_sphere() (in module mvpa2.support.nibabel.surf) generate_testing_datasets() (in module mvpa2.testing.datasets) generator (mvpa2.measures.base.RepeatedMeasure attribute) (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute) (mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute) get() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.base.ConfigManager method) (mvpa2.base.config.ConfigManager method) (mvpa2.misc.surfing.volume_mask_dict.Mapping method) (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_affine() (mvpa2.misc.plot.lightbox.SpatialImage method) get_anatomy_image() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_as_dtype() (mvpa2.base.config.ConfigManager method) (mvpa2.base.ConfigManager method) get_attr() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) get_aux() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_bold_run_dataset() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_bold_run_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_bold_run_image() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_bold_run_model() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_bold_run_motion_estimates() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_break_points() (in module mvpa2.misc.support) get_by_descr() (mvpa2.clfs.warehouse.Warehouse method) get_cluster_pvals() (in module mvpa2.algorithms.group_clusterthr) get_cluster_sizes() (in module mvpa2.algorithms.group_clusterthr) get_data() (mvpa2.misc.plot.lightbox.SpatialImage method) get_data_dtype() (mvpa2.misc.plot.lightbox.SpatialImage method) get_dataset_feature_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_default_values() (mvpa2.misc.cmdline.OptionParser method) get_description() (mvpa2.misc.cmdline.OptionParser method) get_docstring_split() (in module mvpa2.base.dochelpers) (in module mvpa2.base.state) get_empty_array() (mvpa2.misc.surfing.volgeom.VolGeom method) get_empty_nifti_image() (mvpa2.misc.surfing.volgeom.VolGeom method) get_ev() (mvpa2.misc.fsl.base.FslEV3 method) (mvpa2.misc.fsl.FslEV3 method) get_labels_map() (mvpa2.clfs.base.ConfusionMatrix method) (mvpa2.clfs.transerror.ConfusionMatrix method) get_limit_filter() (in module mvpa2.generators.permutation) (in module mvpa2.generators.resampling) (in module mvpa2.misc.support) get_map() (mvpa2.atlases.fsl.FSLProbabilisticAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.warehouse.FSLProbabilisticAtlas method) get_mapped() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) get_maps() (mvpa2.atlases.fsl.FSLProbabilisticAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.warehouse.FSLProbabilisticAtlas method) get_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_masked_array() (mvpa2.misc.surfing.volgeom.VolGeom method) get_masked_nifti_image() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method) (mvpa2.misc.surfing.volgeom.VolGeom method) get_minimal_dataset() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_model_bold_dataset() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_model_conditions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method)

get_model_contrasts() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_model_descriptions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_model_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_mv_pattern() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) get_nelements_per_value() (in module mvpa2.datasets.miscfx) (in module mvpa2.generators.resampling) (in module mvpa2.misc.support) get_nifti_image_mask() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_node2voxels_mapping() (mvpa2.misc.surfing.volsurf.VolSurfMapping method) (mvpa2.misc.surfing.volsurf.VolSurfMaximalMapping method) (mvpa2.misc.surfing.volsurf.VolSurfMinimalLowresMapping method) (mvpa2.misc.surfing.volsurf.VolSurfMinimalMapping method) get_nsamples_per_attr() (in module mvpa2.datasets.miscfx) (in module mvpa2.mappers.zscore) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) get_opt_string() (mvpa2.misc.cmdline.Option method) get_option_group() (mvpa2.misc.cmdline.OptionParser method) get_parameter_dict() (mvpa2.misc.surfing.volsurf.VolSurfMapping method) get_partition_specs() (mvpa2.generators.partition.Partitioner method) get_partitions_attr() (mvpa2.generators.partition.Partitioner method) get_postproc() (mvpa2.base.learner.Node method) (mvpa2.base.node.Node method) (mvpa2.clfs.transerror.Node method) (mvpa2.generators.base.Node method) (mvpa2.generators.partition.Node method) (mvpa2.generators.permutation.Node method) (mvpa2.generators.resampling.Node method) (mvpa2.generators.splitters.Node method) (mvpa2.mappers.fx.Node method) (mvpa2.mappers.slicing.Node method) (mvpa2.measures.base.Node method) get_probmap() (mvpa2.misc.fsl.melodic.MelodicResults method) get_prog_name() (mvpa2.misc.cmdline.OptionParser method) get_pymvpa_gitversion() (in module mvpa2.base.info) get_random_rotation() (in module mvpa2.misc.data_generators) (in module mvpa2.misc.fx) (in module mvpa2.testing.datasets) get_random_seed() (in module mvpa2) get_raw_tmodes() (mvpa2.misc.fsl.melodic.MelodicResults method) get_rng() (in module mvpa2.generators.permutation) (in module mvpa2.generators.resampling) (in module mvpa2.misc.support) get_samples_by_attr() (in module mvpa2.clfs.meta) (in module mvpa2.datasets.miscfx) (in module mvpa2.mappers.zscore) (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) get_samples_per_chunk_target() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) get_scan_properties() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_selected_indexes() (mvpa2.generators.partition.Partitioner method) get_sensitivity_analyzer() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.enet.ENET method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gnb.GNB method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.gpr.GPR method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.lars.LARS method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.BoostedClassifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.meta.ProxyClassifier method) (mvpa2.clfs.meta.SplitClassifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.plr.PLR method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.clfs.smlr.SMLR method) (mvpa2.clfs.warehouse.GNB method) (mvpa2.clfs.warehouse.GPR method) (mvpa2.clfs.warehouse.PLR method) (mvpa2.clfs.warehouse.SMLR method) (mvpa2.clfs.warehouse.SplitClassifier method) (mvpa2.featsel.rfe.ProxyClassifier method) (mvpa2.testing.clfs.Classifier method) (mvpa2.testing.clfs.SMLR method) get_shape() (mvpa2.misc.plot.lightbox.SpatialImage method) get_space() (mvpa2.base.learner.Node method) (mvpa2.base.node.Node method) (mvpa2.clfs.transerror.Node method) (mvpa2.generators.base.Node method) (mvpa2.generators.partition.Node method) (mvpa2.generators.permutation.Node method) (mvpa2.generators.resampling.Node method) (mvpa2.generators.splitters.Node method) (mvpa2.mappers.fx.Node method) (mvpa2.mappers.slicing.Node method) (mvpa2.measures.base.Node method) get_sphere_left_right_mapping() (in module mvpa2.support.nibabel.surf) get_subj_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_surface() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) get_surface_file() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) get_targets() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_task_bold_attributes() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_task_bold_run_ids() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_task_descriptions() (mvpa2.datasets.sources.openfmri.OpenFMRIDataset method) (mvpa2.datasets.sources.OpenFMRIDataset method) get_thresh_zstat() (mvpa2.misc.fsl.melodic.MelodicResults method) get_thresholding_map() (in module mvpa2.algorithms.group_clusterthr) get_tmodes() (mvpa2.misc.fsl.melodic.MelodicResults method) get_trained_mapper() (in module mvpa2.algorithms.hyperalignment) get_tuple_list() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_tuple_list_dict() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) get_usage() (mvpa2.misc.cmdline.OptionParser method) get_version() (mvpa2.misc.cmdline.OptionParser method) get_vmem() (in module mvpa2.base.verbosity) get_vmem_from_status() (in module mvpa2.base.verbosity) get_vmem_str() (in module mvpa2.base.verbosity) get_voxel_indices() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) getboolean() (mvpa2.base.config.ConfigManager method) (mvpa2.base.ConfigManager method) getcol() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) getnewidcode() (in module mvpa2.support.nibabel.afni_niml) getnnz() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) getpid() (in module mvpa2.base.verbosity) getrow() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) getvalue() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) gifti_dataset() (in module mvpa2.datasets.gifti) Git, [1] Git repository GLM (class in mvpa2.measures.statsmodels_adaptor) GLMMapper (class in mvpa2.mappers.glm) GLMNET_C (class in mvpa2.clfs.glmnet) GLMNET_R (class in mvpa2.clfs.glmnet) GLMNETWeights (class in mvpa2.clfs.glmnet) GNB (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.warehouse) gnb (mvpa2.measures.gnbsearchlight.GNBSearchlight attribute) GNBSearchlight (class in mvpa2.measures.gnbsearchlight) GNBWeights (class in mvpa2.clfs.gnb) GPR, [1] (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.warehouse) GPRLinearWeights (class in mvpa2.clfs.gpr) gradient() (mvpa2.kernels.np.ExponentialKernel method) (mvpa2.kernels.np.Matern_3_2Kernel method) (mvpa2.kernels.np.RationalQuadraticKernel method) (mvpa2.measures.irelief.ExponentialKernel method) grand_mean() (in module mvpa2.misc.transformers) griddata() (in module mvpa2.misc.plot.flat_surf) (in module mvpa2.misc.plot.topo) group_kwargs() (in module mvpa2.clfs.meta) (in module mvpa2.measures.base) (in module mvpa2.misc.args) group_sample_loser_measure() (in module mvpa2.measures.winner) group_sample_winner_measure() (in module mvpa2.measures.winner) GroupClusterThreshold (class in mvpa2.algorithms.group_clusterthr)

H

h5load() (in module mvpa2.algorithms.searchlight_hyperalignment) (in module mvpa2.base.hdf5) (in module mvpa2.datasets.niml) (in module mvpa2.measures.searchlight) (in module mvpa2.misc.surfing.surf_voxel_selection) (in module mvpa2.misc.surfing.volume_mask_dict) h5save() (in module mvpa2.algorithms.searchlight_hyperalignment) (in module mvpa2.base.hdf5) (in module mvpa2.datasets.niml) (in module mvpa2.measures.searchlight) (in module mvpa2.misc.surfing.surf_voxel_selection) (in module mvpa2.misc.surfing.volume_mask_dict) HalfPartitioner (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.generators.partition) handle_docstring() (in module mvpa2.base.dochelpers) handlers (mvpa2.base.verbosity.Logger attribute) hdf2obj() (in module mvpa2.base.hdf5)

header_class (mvpa2.misc.plot.lightbox.SpatialImage attribute) header_def (mvpa2.misc.fsl.base.McFlirtParams attribute) (mvpa2.misc.fsl.McFlirtParams attribute) hemi_pairs_add_views() (in module mvpa2.support.nibabel.afni_suma_spec) hist() (in module mvpa2.viz) history hlcuster HollowSamples (class in mvpa2.datasets.base) (class in mvpa2.testing.datasets) HollowSphere (class in mvpa2.misc.neighborhood) hour (mvpa2.base.report.datetime attribute) hstack() (in module mvpa2.base.dataset) (in module mvpa2.datasets.niml) (in module mvpa2.measures.base) (in module mvpa2.measures.searchlight) hyperalignment Hyperalignment (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment)

I

ic (mvpa2.misc.fsl.melodic.MelodicResults attribute) ICAMapper (class in mvpa2.mappers.mdp_adaptor) icstats (mvpa2.misc.fsl.melodic.MelodicResults attribute) Identity() (in module mvpa2.misc.transformers) IdentityMapper (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.mappers.base) IdentityNeighborhood (class in mvpa2.misc.neighborhood) idhash (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) idhash() (in module mvpa2.clfs.base) (in module mvpa2.misc.support) idhash_() (in module mvpa2.datasets.base) (in module mvpa2.misc.neighborhood) ids (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine attribute) (mvpa2.datasets.cosmo.CosmoQueryEngine attribute) (mvpa2.misc.neighborhood.QueryEngine attribute) (mvpa2.misc.surfing.queryengine.SurfaceQueryEngine attribute) (mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine attribute) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine attribute) (mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine attribute) IFS (class in mvpa2.featsel.ifs) iir_filter() (in module mvpa2.mappers.filters) IIRFilterMapper (class in mvpa2.mappers.filters) ijk2lin() (mvpa2.misc.surfing.volgeom.VolGeom method) ijk2triples() (mvpa2.misc.surfing.volgeom.VolGeom method) ijk2xyz() (mvpa2.misc.surfing.volgeom.VolGeom method) in_memory (mvpa2.misc.plot.lightbox.SpatialImage attribute) indent (mvpa2.base.LevelLogger attribute) (mvpa2.base.verbosity.LevelLogger attribute) indent_doc() (in module mvpa2.clfs.knn) (in module mvpa2.misc.support) index (mvpa2.atlases.base.Label attribute) (mvpa2.atlases.base.LabelsLevel attribute) (mvpa2.atlases.fsl.LabelsLevel attribute) (mvpa2.atlases.warehouse.Label attribute) (mvpa2.atlases.warehouse.LabelsLevel attribute) IndexedCollectable (class in mvpa2.base.attributes) (class in mvpa2.base.param) (class in mvpa2.base.state) indexes (mvpa2.atlases.base.ReferencesLevel attribute) (mvpa2.atlases.warehouse.ReferencesLevel attribute) IndexQueryEngine (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.measures.gnbsearchlight) (class in mvpa2.measures.nnsearchlight) (class in mvpa2.measures.searchlight) (class in mvpa2.misc.data_generators) (class in mvpa2.misc.neighborhood) (class in mvpa2.testing.datasets) indexsum (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute) (mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute) info init_origids() (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) inner_radius (mvpa2.misc.neighborhood.HollowSphere attribute) installation intensities (mvpa2.misc.fsl.base.FslEV3 attribute) (mvpa2.misc.fsl.FslEV3 attribute) intermediate_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute) internals (mvpa2.clfs.warehouse.Warehouse attribute) introduction invariant features inverse_cmap() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) IPython is_active() (mvpa2.base.state.ConditionalAttributesCollection method) is_datasetlike() (in module mvpa2.algorithms.searchlight_hyperalignment) (in module mvpa2.base.dataset) (in module mvpa2.base.learner) (in module mvpa2.base.types) (in module mvpa2.clfs.base) (in module mvpa2.clfs.stats) (in module mvpa2.kernels.base) (in module mvpa2.mappers.base) (in module mvpa2.mappers.procrustean) (in module mvpa2.measures.searchlight) (in module mvpa2.viz) is_default (mvpa2.algorithms.group_clusterthr.Parameter attribute) (mvpa2.algorithms.hyperalignment.Parameter attribute) (mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute) (mvpa2.base.param.Parameter attribute) (mvpa2.clfs.base.Parameter attribute) (mvpa2.clfs.gda.Parameter attribute) (mvpa2.clfs.glmnet.Parameter attribute) (mvpa2.clfs.gnb.Parameter attribute) (mvpa2.clfs.gpr.Parameter attribute) (mvpa2.clfs.meta.Parameter attribute) (mvpa2.clfs.smlr.Parameter attribute) (mvpa2.kernels.base.Parameter attribute) (mvpa2.kernels.libsvm.Parameter attribute) (mvpa2.kernels.np.Parameter attribute) (mvpa2.kernels.sg.Parameter attribute) (mvpa2.mappers.detrend.Parameter attribute) (mvpa2.mappers.filters.Parameter attribute) (mvpa2.mappers.fx.Parameter attribute) (mvpa2.mappers.glm.Parameter attribute) (mvpa2.mappers.procrustean.Parameter attribute) (mvpa2.measures.rsa.Parameter attribute) is_enabled() (mvpa2.base.state.ConditionalAttributesCollection method) is_in_volume() (in module mvpa2.mappers.flatten) (in module mvpa2.mappers.mdp_adaptor) (in module mvpa2.misc.support)

is_same_layout() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) is_sequence_type() (in module mvpa2.base.collections) (in module mvpa2.base.state) (in module mvpa2.base.types) (in module mvpa2.clfs.meta) (in module mvpa2.clfs.warehouse) (in module mvpa2.datasets.miscfx) (in module mvpa2.mappers.detrend) (in module mvpa2.misc.attrmap) (in module mvpa2.misc.neighborhood) (in module mvpa2.misc.support) is_set (mvpa2.base.attributes.IndexedCollectable attribute) (mvpa2.base.param.IndexedCollectable attribute) (mvpa2.base.state.IndexedCollectable attribute) is_set() (mvpa2.base.state.Collection method) is_sorted() (in module mvpa2.misc.support) is_trained (mvpa2.algorithms.group_clusterthr.Learner attribute) (mvpa2.base.learner.CompoundLearner attribute) (mvpa2.base.learner.Learner attribute) (mvpa2.clfs.base.Learner attribute) (mvpa2.clfs.enet.Sensitivity attribute) (mvpa2.clfs.glmnet.Sensitivity attribute) (mvpa2.clfs.gnb.Sensitivity attribute) (mvpa2.clfs.gpr.Sensitivity attribute) (mvpa2.clfs.lars.Sensitivity attribute) (mvpa2.clfs.plr.Sensitivity attribute) (mvpa2.clfs.smlr.Sensitivity attribute) (mvpa2.featsel.rfe.Sensitivity attribute) (mvpa2.mappers.base.Learner attribute) (mvpa2.mappers.fx.BinomialProportionCI attribute) (mvpa2.mappers.fx.FxMapper attribute) (mvpa2.mappers.fx.MeanRemoval attribute) (mvpa2.mappers.shape.AddAxisMapper attribute) (mvpa2.mappers.shape.TransposeMapper attribute) (mvpa2.mappers.skl_adaptor.Learner attribute) (mvpa2.measures.base.Learner attribute) (mvpa2.measures.base.RepeatedMeasure attribute) (mvpa2.measures.base.Sensitivity attribute) (mvpa2.measures.base.TransferMeasure attribute) (mvpa2.measures.corrcoef.CorrCoef attribute) (mvpa2.measures.corrstability.CorrStability attribute) (mvpa2.measures.irelief.IterativeRelief attribute) (mvpa2.measures.irelief.IterativeReliefOnline attribute) (mvpa2.measures.irelief.IterativeReliefOnline_Devel attribute) (mvpa2.measures.irelief.IterativeRelief_Devel attribute) (mvpa2.measures.noiseperturbation.NoisePerturbationSensitivity attribute) (mvpa2.measures.rsa.PDist attribute) (mvpa2.measures.rsa.PDistConsistency attribute) (mvpa2.measures.rsa.PDistTargetSimilarity attribute) (mvpa2.measures.rsa.Regression attribute) (mvpa2.measures.searchlight.BaseSearchlight attribute) (mvpa2.measures.statsmodels_adaptor.UnivariateStatsModels attribute) (mvpa2.measures.winner.WinnerMeasure attribute) (mvpa2.testing.clfs.SillySensitivityAnalyzer attribute) is_trained() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.testing.clfs.Classifier method) isatty() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) isoformat() (mvpa2.base.report.datetime method) istest() (in module mvpa2.testing) (in module mvpa2.testing.tools) item() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) items (mvpa2.clfs.warehouse.Warehouse attribute) items() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) (mvpa2.misc.surfing.volume_mask_dict.Mapping method) IterativeFeatureSelection (class in mvpa2.featsel.base) (class in mvpa2.featsel.ifs) (class in mvpa2.featsel.rfe) IterativeRelief (class in mvpa2.measures.irelief) IterativeRelief_Devel (class in mvpa2.measures.irelief) IterativeReliefOnline (class in mvpa2.measures.irelief) IterativeReliefOnline_Devel (class in mvpa2.measures.irelief) iteritems() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) (mvpa2.misc.surfing.volume_mask_dict.Mapping method) iterkeys() (mvpa2.misc.surfing.volume_mask_dict.Mapping method) iterprod (in module mvpa2.generators.partition) itervalues() (mvpa2.misc.surfing.volume_mask_dict.Mapping method)

K

K (mvpa2.mappers.som.SimpleSOMMapper attribute) k() (mvpa2.measures.irelief.IterativeRelief method) Kernel (class in mvpa2.kernels) (class in mvpa2.kernels.base) (class in mvpa2.kernels.libsvm) (class in mvpa2.kernels.sg) kernel (mvpa2.clfs.gpr.GPR attribute) (mvpa2.clfs.warehouse.GPR attribute) KernelParameter (class in mvpa2.base.param) keys() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) (mvpa2.misc.surfing.volume_mask_dict.Mapping method)

keywords (mvpa2.measures.winner.partial attribute) kNN (class in mvpa2.clfs.knn) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) knn (mvpa2.measures.nnsearchlight.M1NNSearchlight attribute) kstest() (in module mvpa2.clfs.stats)

L

l1_normed() (in module mvpa2.misc.transformers) l2_normed() (in module mvpa2.misc.transformers) Label (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) label2index() (in module mvpa2.support.nibabel.afni_niml_dset) label_point() (mvpa2.atlases.base.XMLBasedAtlas method) (mvpa2.atlases.fsl.XMLBasedAtlas method) (mvpa2.atlases.warehouse.XMLBasedAtlas method) label_voxel() (mvpa2.atlases.base.LabelsAtlas method) (mvpa2.atlases.FSLProbabilisticAtlas method) (mvpa2.atlases.LabelsAtlas method) (mvpa2.atlases.ReferencesAtlas method) (mvpa2.atlases.base.ReferencesAtlas method) (mvpa2.atlases.fsl.FSLProbabilisticAtlas method) (mvpa2.atlases.warehouse.FSLProbabilisticAtlas method) (mvpa2.atlases.warehouse.LabelsAtlas method) (mvpa2.atlases.warehouse.ReferencesAtlas method) labels (mvpa2.atlases.base.LabelsLevel attribute) (mvpa2.atlases.fsl.LabelsLevel attribute) (mvpa2.atlases.warehouse.LabelsLevel attribute) (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.transerror.ClassifierError attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) (mvpa2.featsel.rfe.ClassifierError attribute) labels2chunks() (in module mvpa2.misc.io) (in module mvpa2.misc.io.base) labels_map (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) LabelsAtlas (class in mvpa2.atlases) (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) LabelsLevel (class in mvpa2.atlases.base) (class in mvpa2.atlases.fsl) (class in mvpa2.atlases.warehouse) labile() (in module mvpa2.testing) (in module mvpa2.testing.tools) LARS (class in mvpa2.clfs.lars) LARSWeights (class in mvpa2.clfs.lars) LDA (class in mvpa2.clfs.gda) (class in mvpa2.clfs.warehouse) Learner (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.base.learner) (class in mvpa2.clfs.base) (class in mvpa2.mappers.base) (class in mvpa2.mappers.skl_adaptor) (class in mvpa2.measures.base) learner (mvpa2.measures.base.CrossValidation attribute) least_sq_fit() (in module mvpa2.misc.fx) leastsq() (in module mvpa2.misc.plot.topo) legendre() (in module mvpa2.mappers.detrend) legendre_() (in module mvpa2.mappers.detrend) length_scale (mvpa2.clfs.gpr.SquaredExponentialKernel attribute) (mvpa2.clfs.warehouse.SquaredExponentialKernel attribute) (mvpa2.kernels.np.SquaredExponentialKernel attribute) Less1Classifier (class in mvpa2.testing.clfs) Level (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) level (mvpa2.base.LevelLogger attribute) (mvpa2.base.verbosity.LevelLogger attribute) level_type (mvpa2.atlases.base.Level attribute) (mvpa2.atlases.warehouse.Level attribute) LevelLogger (class in mvpa2.base) (class in mvpa2.base.verbosity) levels (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) levels_listing() (mvpa2.atlases.base.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) (mvpa2.atlases.base.XMLBasedAtlas method) (mvpa2.atlases.fsl.XMLBasedAtlas method) (mvpa2.atlases.warehouse.ReferencesAtlas method) (mvpa2.atlases.warehouse.XMLBasedAtlas method) lexists() (in module mvpa2.base.dataset) lfprev (mvpa2.base.verbosity.Logger attribute) LIBSVM, [1] license limit (mvpa2.clfs.stats.AttributePermutator attribute) (mvpa2.generators.permutation.AttributePermutator attribute) lin2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method) lin2xyz() (mvpa2.misc.surfing.volgeom.VolGeom method) Linear (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) linear1d_gaussian_noise() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) linear_awgn() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) linear_mask (mvpa2.misc.surfing.volgeom.VolGeom attribute) linear_voxel_id2feature_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) LinearCSVMC (class in mvpa2.clfs.svm) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) LinearKernel (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.np) LinearLSKernel (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.libsvm) LinearNuSVMC (class in mvpa2.clfs.svm) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) LinearSGKernel (class in mvpa2.kernels.sg) LinearSVMKernel (in module mvpa2.clfs.svm) (in module mvpa2.clfs.warehouse) (in module mvpa2.testing.clfs)

linregress() (in module mvpa2.clfs.transerror) listing (mvpa2.base.state.Collection attribute) listing() (mvpa2.clfs.warehouse.Warehouse method) LLEMapper (class in mvpa2.mappers.lle) load_atlas() (mvpa2.atlases.base.XMLBasedAtlas method) (mvpa2.atlases.fsl.XMLBasedAtlas method) (mvpa2.atlases.warehouse.XMLBasedAtlas method) load_events() (in module mvpa2.datasets.sources.bids) load_example_fmri_dataset() (in module mvpa2.datasets.sources) (in module mvpa2.datasets.sources.native) load_tutorial_data() (in module mvpa2.datasets.sources) (in module mvpa2.datasets.sources.native) loadmat() (in module mvpa2.datasets.cosmo) local_random_affine_transformations() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) locations() (mvpa2.misc.io.base.SensorLocations method) (mvpa2.misc.io.SensorLocations method) log10() (in module mvpa2.clfs.transerror) LogExclusions (class in mvpa2.generators.resampling) Logger (class in mvpa2.base.verbosity) long_description() (mvpa2.algorithms.group_clusterthr.EnsureChoice method) (mvpa2.algorithms.group_clusterthr.EnsureRange method) (mvpa2.algorithms.hyperalignment.AltConstraints method) (mvpa2.algorithms.hyperalignment.Constraint method) (mvpa2.algorithms.hyperalignment.Constraints method) (mvpa2.algorithms.hyperalignment.EnsureBool method) (mvpa2.algorithms.hyperalignment.EnsureChoice method) (mvpa2.algorithms.hyperalignment.EnsureDType method) (mvpa2.algorithms.hyperalignment.EnsureListOf method) (mvpa2.algorithms.hyperalignment.EnsureNone method) (mvpa2.algorithms.hyperalignment.EnsureRange method) (mvpa2.algorithms.hyperalignment.EnsureStr method) (mvpa2.algorithms.hyperalignment.EnsureTupleOf method) (mvpa2.algorithms.searchlight_hyperalignment.AltConstraints method) (mvpa2.algorithms.searchlight_hyperalignment.Constraint method) (mvpa2.algorithms.searchlight_hyperalignment.Constraints method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureBool method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureChoice method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureDType method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureListOf method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureNone method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureRange method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureStr method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureTupleOf method) (mvpa2.base.constraints.AltConstraints method) (mvpa2.base.constraints.Constraint method) (mvpa2.base.constraints.Constraints method) (mvpa2.base.constraints.EnsureBool method) (mvpa2.base.constraints.EnsureChoice method) (mvpa2.base.constraints.EnsureDType method) (mvpa2.base.constraints.EnsureListOf method) (mvpa2.base.constraints.EnsureNone method) (mvpa2.base.constraints.EnsureRange method) (mvpa2.base.constraints.EnsureStr method) (mvpa2.base.constraints.EnsureTupleOf method) (mvpa2.clfs.gda.EnsureChoice method) (mvpa2.clfs.glmnet.AltConstraints method) (mvpa2.clfs.glmnet.Constraint method) (mvpa2.clfs.glmnet.Constraints method) (mvpa2.clfs.glmnet.EnsureBool method) (mvpa2.clfs.glmnet.EnsureChoice method) (mvpa2.clfs.glmnet.EnsureDType method) (mvpa2.clfs.glmnet.EnsureListOf method) (mvpa2.clfs.glmnet.EnsureNone method) (mvpa2.clfs.glmnet.EnsureRange method) (mvpa2.clfs.glmnet.EnsureStr method) (mvpa2.clfs.glmnet.EnsureTupleOf method) (mvpa2.clfs.gnb.EnsureChoice method) (mvpa2.clfs.gpr.EnsureNone method) (mvpa2.clfs.gpr.EnsureRange method) (mvpa2.clfs.smlr.AltConstraints method) (mvpa2.clfs.smlr.Constraint method) (mvpa2.clfs.smlr.Constraints method) (mvpa2.clfs.smlr.EnsureBool method) (mvpa2.clfs.smlr.EnsureChoice method) (mvpa2.clfs.smlr.EnsureDType method) (mvpa2.clfs.smlr.EnsureListOf method) (mvpa2.clfs.smlr.EnsureNone method) (mvpa2.clfs.smlr.EnsureRange method) (mvpa2.clfs.smlr.EnsureStr method) (mvpa2.clfs.smlr.EnsureTupleOf method) (mvpa2.kernels.np.EnsureListOf method) (mvpa2.mappers.filters.EnsureChoice method) (mvpa2.mappers.filters.EnsureNone method) (mvpa2.mappers.fx.AltConstraints method) (mvpa2.mappers.fx.Constraint method) (mvpa2.mappers.fx.Constraints method) (mvpa2.mappers.fx.EnsureBool method) (mvpa2.mappers.fx.EnsureChoice method) (mvpa2.mappers.fx.EnsureDType method) (mvpa2.mappers.fx.EnsureListOf method) (mvpa2.mappers.fx.EnsureNone method) (mvpa2.mappers.fx.EnsureRange method) (mvpa2.mappers.fx.EnsureStr method) (mvpa2.mappers.fx.EnsureTupleOf method) (mvpa2.mappers.procrustean.EnsureChoice method) (mvpa2.measures.rsa.EnsureChoice method) lower (mvpa2.clfs.warehouse.RangeElementSelector attribute) (mvpa2.featsel.helpers.RangeElementSelector attribute) lrn (mvpa2.clfs.warehouse.SplitRFE attribute) (mvpa2.featsel.rfe.SplitRFE attribute) LSKernel (class in mvpa2.kernels.libsvm) lstsq() (in module mvpa2.clfs.ridge)

M

M1NNSearchlight (class in mvpa2.measures.nnsearchlight) Machine Learning MacOS X, [1], [2] mahalanobis_distance() (in module mvpa2.clfs.distance) make_decorator() (in module mvpa2.testing) (in module mvpa2.testing.tools) make_flobs() (in module mvpa2.misc.fsl) (in module mvpa2.misc.fsl.flobs) manhattan_distance() (in module mvpa2.clfs.distance) manhatten_distance() (in module mvpa2.clfs.distance) map2cosmo() (in module mvpa2.datasets.cosmo) map2gifti() (in module mvpa2.datasets.gifti) map2nifti() (in module mvpa2.datasets.mri) map_to_high_resolution_surf() (mvpa2.support.nibabel.surf.Surface method) map_to_high_resolution_surf_slow() (mvpa2.support.nibabel.surf.Surface method) MapOverlap (class in mvpa2.misc.support) MappedClassifier (class in mvpa2.clfs.meta) MappedClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) Mapper mapper, [1] Mapper (class in mvpa2.mappers.base) (class in mvpa2.mappers.boxcar) (class in mvpa2.mappers.detrend) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.flatten) (class in mvpa2.mappers.fx) (class in mvpa2.mappers.fxy) (class in mvpa2.mappers.glm) (class in mvpa2.mappers.mdp_adaptor) (class in mvpa2.mappers.projection) (class in mvpa2.mappers.shape) (class in mvpa2.mappers.skl_adaptor) (class in mvpa2.mappers.slicing) (class in mvpa2.mappers.som) (class in mvpa2.mappers.wavelet) (class in mvpa2.mappers.zscore) mapper (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.meta.MappedClassifier attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) mappers (mvpa2.mappers.base.CombinedMapper attribute) Mapping (class in mvpa2.misc.surfing.volume_mask_dict) mask (mvpa2.misc.fsl.melodic.MelodicResults attribute) (mvpa2.misc.surfing.volgeom.VolGeom attribute) mask2slice() (in module mvpa2.featsel.base) (in module mvpa2.generators.splitters) (in module mvpa2.mappers.slicing) (in module mvpa2.misc.support) mask_mapper() (in module mvpa2.datasets.base) (in module mvpa2.mappers.flatten) MASSLearnerAdapter (class in mvpa2.clfs.mass) match() (mvpa2.base.collections.UniformLengthCollection method) match_accuracy() (in module mvpa2.misc.errorfx) match_distribution() (in module mvpa2.clfs.stats) Matern_3_2Kernel (class in mvpa2.kernels.np) Matern_5_2Kernel (class in mvpa2.kernels.np) Matlab matplotlib matrices (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) matrix (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) matshow() (in module mvpa2.viz) max (mvpa2.base.report.datetime attribute) max_log_marginal_likelihood() (mvpa2.clfs.model_selector.ModelSelector method) max_of_abs() (in module mvpa2.mappers.fx) (in module mvpa2.misc.transformers) maxcount (mvpa2.base.WarningLog attribute) maxdims (mvpa2.algorithms.benchmarks.hyperalignment.FlattenMapper attribute) (mvpa2.datasets.base.FlattenMapper attribute) (mvpa2.datasets.cosmo.FlattenMapper attribute) (mvpa2.datasets.eeglab.FlattenMapper attribute) (mvpa2.datasets.eventrelated.FlattenMapper attribute) (mvpa2.datasets.mri.FlattenMapper attribute) (mvpa2.mappers.flatten.FlattenMapper attribute) MaximalVote (class in mvpa2.clfs.meta) maxofabs_sample() (in module mvpa2.clfs.warehouse) (in module mvpa2.featsel.rfe) (in module mvpa2.mappers.fx) mbasename() (in module mvpa2.base.verbosity) McFlirtParams (class in mvpa2.misc.fsl) (class in mvpa2.misc.fsl.base) MCNullDist (class in mvpa2.clfs.stats) MDP MDPFlowMapper (class in mvpa2.mappers.mdp_adaptor) MDPNodeMapper (class in mvpa2.mappers.lle) (class in mvpa2.mappers.mdp_adaptor) mean_axis0() (in module mvpa2.algorithms.hyperalignment) mean_feature() (in module mvpa2.mappers.fx) mean_fnr() (in module mvpa2.misc.errorfx) mean_group_feature() (in module mvpa2.mappers.fx) mean_group_sample() (in module mvpa2.algorithms.benchmarks.hyperalignment) (in module mvpa2.mappers.fx) (in module mvpa2.measures.rsa) (in module mvpa2.measures.winner) mean_match_accuracy() (in module mvpa2.misc.errorfx) mean_min() (in module mvpa2.clfs.distance) mean_mismatch_error() (in module mvpa2.clfs.transerror) (in module mvpa2.featsel.rfe) (in module mvpa2.measures.base) (in module mvpa2.misc.errorfx) mean_power_fx() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) mean_sample() (in module mvpa2.algorithms.group_clusterthr) (in module mvpa2.mappers.fx) mean_tpr() (in module mvpa2.misc.errorfx) mean_xy() (in module mvpa2.algorithms.hyperalignment) MeanPrediction (class in mvpa2.clfs.meta) MeanRemoval (class in mvpa2.mappers.fx) means (mvpa2.clfs.gda.GDA attribute) (mvpa2.clfs.gnb.GNB attribute) (mvpa2.clfs.warehouse.GNB attribute) Measure (class in mvpa2.clfs.base) (class in mvpa2.measures.base) (class in mvpa2.measures.rsa) (class in mvpa2.measures.searchlight) (class in mvpa2.measures.winner) measure (mvpa2.featsel.rfe.ProxyMeasure attribute) (mvpa2.measures.base.ProxyMeasure attribute) (mvpa2.measures.base.StaticMeasure attribute) (mvpa2.measures.base.TransferMeasure attribute) MelodicResults (class in mvpa2.misc.fsl.melodic) merge() (in module mvpa2.support.nibabel.afni_niml_annot) (in module mvpa2.support.nibabel.surf) (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) (mvpa2.support.nibabel.surf.Surface method) merge2first() (in module mvpa2.mappers.fx) merge_left_right() (in module mvpa2.support.nibabel.afni_suma_spec) meta (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute) Meta-classifier meta-classifier method (mvpa2.featsel.base.CombinedFeatureSelection attribute) metrics (mvpa2.base.DebugLogger attribute) (mvpa2.base.verbosity.DebugLogger attribute) microsecond (mvpa2.base.report.datetime attribute) min (mvpa2.base.report.datetime attribute) minute (mvpa2.base.report.datetime attribute) misc mismatch_error() (in module mvpa2.misc.errorfx) mkds mkevds mkstemp() (in module mvpa2.base.info) mktemp() (in module mvpa2.algorithms.searchlight_hyperalignment) mode (mvpa2.featsel.helpers.ElementSelector attribute) (mvpa2.mappers.svd.ElementSelector attribute) model (mvpa2.clfs.svm.SVM attribute) (mvpa2.clfs.warehouse.SVM attribute) (mvpa2.testing.clfs.SVM attribute) model selection, [1] ModelSelector (class in mvpa2.clfs.model_selector) modular architecture monte-carlo, [1], [2] most_common() (mvpa2.algorithms.group_clusterthr.Counter method) motion correction

MulticlassClassifier (class in mvpa2.clfs.meta) (class in mvpa2.clfs.warehouse) multiple_chunks() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) MultiStopCrit (class in mvpa2.featsel.helpers) MVPA, [1] MVPA toolbox for Matlab, [1] mvpa2 (module) mvpa2.algorithms (module) mvpa2.algorithms.benchmarks (module) mvpa2.algorithms.benchmarks.hyperalignment (module) mvpa2.algorithms.group_clusterthr (module) mvpa2.algorithms.hyperalignment (module) mvpa2.algorithms.searchlight_hyperalignment (module) mvpa2.atlases (module) mvpa2.atlases.base (module) mvpa2.atlases.fsl (module) mvpa2.atlases.warehouse (module) mvpa2.base (module) mvpa2.base.attributes (module) mvpa2.base.collections (module) mvpa2.base.config (module) mvpa2.base.constraints (module) mvpa2.base.dataset (module) mvpa2.base.dochelpers (module) mvpa2.base.externals (module) mvpa2.base.hdf5 (module) mvpa2.base.info (module) mvpa2.base.learner (module) mvpa2.base.node (module) mvpa2.base.param (module) mvpa2.base.progress (module) mvpa2.base.report (module) mvpa2.base.state (module) mvpa2.base.types (module) mvpa2.base.verbosity (module) mvpa2.clfs.base (module) mvpa2.clfs.blr (module) mvpa2.clfs.distance (module) mvpa2.clfs.enet (module) mvpa2.clfs.gda (module) mvpa2.clfs.glmnet (module) mvpa2.clfs.gnb (module) mvpa2.clfs.gpr (module) mvpa2.clfs.knn (module) mvpa2.clfs.lars (module) mvpa2.clfs.libsvmc (module) mvpa2.clfs.mass (module) mvpa2.clfs.meta (module) mvpa2.clfs.model_selector (module) mvpa2.clfs.plr (module) mvpa2.clfs.ridge (module) mvpa2.clfs.sg (module) mvpa2.clfs.similarity (module) mvpa2.clfs.skl (module) mvpa2.clfs.smlr (module) mvpa2.clfs.stats (module) mvpa2.clfs.svm (module) mvpa2.clfs.transerror (module) mvpa2.clfs.warehouse (module) mvpa2.datasets.base (module) mvpa2.datasets.channel (module) mvpa2.datasets.cosmo (module) mvpa2.datasets.eeglab (module) mvpa2.datasets.eep (module) mvpa2.datasets.eventrelated (module) mvpa2.datasets.formats (module) mvpa2.datasets.gifti (module) mvpa2.datasets.miscfx (module) mvpa2.datasets.mri (module) mvpa2.datasets.niml (module) mvpa2.datasets.sources (module) mvpa2.datasets.sources.bids (module) mvpa2.datasets.sources.native (module) mvpa2.datasets.sources.openfmri (module) mvpa2.datasets.sources.skl_data (module) mvpa2.featsel.base (module) mvpa2.featsel.helpers (module) mvpa2.featsel.ifs (module) mvpa2.featsel.rfe (module) mvpa2.generators (module) mvpa2.generators.base (module) mvpa2.generators.partition (module) mvpa2.generators.permutation (module) mvpa2.generators.resampling (module) mvpa2.generators.splitters (module) mvpa2.kernels (module) mvpa2.kernels.base (module) mvpa2.kernels.libsvm (module) mvpa2.kernels.np (module) mvpa2.kernels.sg (module) mvpa2.mappers (module) mvpa2.mappers.base (module) mvpa2.mappers.boxcar (module) mvpa2.mappers.detrend (module) mvpa2.mappers.filters (module) mvpa2.mappers.flatten (module) mvpa2.mappers.fx (module) mvpa2.mappers.fxy (module) mvpa2.mappers.glm (module) mvpa2.mappers.lle (module) mvpa2.mappers.mdp_adaptor (module) mvpa2.mappers.procrustean (module) mvpa2.mappers.projection (module) mvpa2.mappers.prototype (module) mvpa2.mappers.shape (module) mvpa2.mappers.skl_adaptor (module) mvpa2.mappers.slicing (module) mvpa2.mappers.som (module) mvpa2.mappers.staticprojection (module) mvpa2.mappers.svd (module) mvpa2.mappers.wavelet (module) mvpa2.mappers.zscore (module) mvpa2.measures.anova (module) mvpa2.measures.base (module) mvpa2.measures.corrcoef (module) mvpa2.measures.corrstability (module) mvpa2.measures.gnbsearchlight (module) mvpa2.measures.irelief (module) mvpa2.measures.nnsearchlight (module) mvpa2.measures.noiseperturbation (module) mvpa2.measures.rsa (module) mvpa2.measures.searchlight (module) mvpa2.measures.statsmodels_adaptor (module) mvpa2.measures.winner (module) mvpa2.misc (module) mvpa2.misc.args (module) mvpa2.misc.attrmap (module) mvpa2.misc.bv (module) mvpa2.misc.bv.base (module) mvpa2.misc.cmdline (module) mvpa2.misc.data_generators (module) mvpa2.misc.dcov (module) mvpa2.misc.errorfx (module) mvpa2.misc.exceptions (module) mvpa2.misc.fsl (module) mvpa2.misc.fsl.base (module) mvpa2.misc.fsl.flobs (module) mvpa2.misc.fsl.melodic (module) mvpa2.misc.fx (module) mvpa2.misc.io (module) mvpa2.misc.io.base (module) mvpa2.misc.io.meg (module) mvpa2.misc.neighborhood (module) mvpa2.misc.plot (module) mvpa2.misc.plot.base (module) mvpa2.misc.plot.erp (module) mvpa2.misc.plot.flat_surf (module) mvpa2.misc.plot.lightbox (module) mvpa2.misc.plot.scatter (module) mvpa2.misc.plot.topo (module) mvpa2.misc.sampleslookup (module) mvpa2.misc.stats (module) mvpa2.misc.support (module) mvpa2.misc.surfing (module) mvpa2.misc.surfing.queryengine (module) mvpa2.misc.surfing.surf_voxel_selection (module) mvpa2.misc.surfing.volgeom (module) mvpa2.misc.surfing.volsurf (module) mvpa2.misc.surfing.volume_mask_dict (module) mvpa2.misc.transformers (module) mvpa2.misc.vproperty (module) mvpa2.support.bayes (module) mvpa2.support.nibabel (module) mvpa2.support.nibabel.afni_niml (module) mvpa2.support.nibabel.afni_niml_annot (module) mvpa2.support.nibabel.afni_niml_dset (module) mvpa2.support.nibabel.afni_niml_roi (module) mvpa2.support.nibabel.afni_suma_1d (module) mvpa2.support.nibabel.afni_suma_spec (module) mvpa2.support.nibabel.surf (module) mvpa2.support.nibabel.surf_caret (module) mvpa2.support.nibabel.surf_fs_asc (module) mvpa2.support.nibabel.surf_gifti (module) mvpa2.testing (module) mvpa2.testing.clfs (module) mvpa2.testing.datasets (module) mvpa2.testing.tools (module) mvpa2.tests (module) mvpa2.viz (module) MVPA_DEBUG, [1], [2] MVPA_DEBUG_METRICS MVPA_DEBUG_WTF MVPA_EXAMPLES_INTERACTIVE MVPA_MATPLOTLIB_BACKEND MVPA_QUICKTEST MVPA_SEED MVPA_SVM_BACKEND MVPA_TESTS_LABILE, [1] MVPA_TESTS_QUICK, [1] MVPA_VERBOSE MVPA_VERBOSE_OUTPUT MVPA_WARNINGS_BT MVPA_WARNINGS_COUNT, [1] MVPA_WARNINGS_SUPPRESS

N

name (mvpa2.base.attributes.Collectable attribute) (mvpa2.base.collections.Collectable attribute) (mvpa2.clfs.transerror.Collectable attribute) nanmax_wrapper() (in module mvpa2.misc.plot.flat_surf) nanmean() (in module mvpa2.clfs.stats) (in module mvpa2.clfs.transerror) nanmean_face_normal (mvpa2.support.nibabel.surf.Surface attribute) nanmin_wrapper() (in module mvpa2.misc.plot.flat_surf) NBackHistoryStopCrit (class in mvpa2.featsel.base) (class in mvpa2.featsel.helpers) (class in mvpa2.featsel.ifs) (class in mvpa2.featsel.rfe) nchannels (mvpa2.datasets.eep.EEPBin attribute) ncolumns (mvpa2.misc.bv.base.ColumnData attribute) (mvpa2.misc.bv.ColumnData attribute) (mvpa2.misc.fsl.ColumnData attribute) (mvpa2.misc.fsl.base.ColumnData attribute) (mvpa2.misc.io.ColumnData attribute) (mvpa2.misc.io.base.ColumnData attribute) ncombinations() (in module mvpa2.misc.support) Ndiag() (in module mvpa2.clfs.gpr) Ndot() (in module mvpa2.clfs.gpr) nearest_node_index() (mvpa2.support.nibabel.surf.Surface method) neglabels (mvpa2.clfs.meta.BinaryClassifier attribute) neighbors (mvpa2.support.nibabel.surf.Surface attribute) nelements (mvpa2.algorithms.searchlight_hyperalignment.FixedNElementTailSelector attribute) (mvpa2.clfs.warehouse.FixedNElementTailSelector attribute) (mvpa2.featsel.helpers.FixedNElementTailSelector attribute) (mvpa2.featsel.ifs.FixedNElementTailSelector attribute) Neural Data Modality nevs (mvpa2.misc.fsl.base.FslEV3 attribute) (mvpa2.misc.fsl.FslEV3 attribute) next (mvpa2.measures.rsa.combinations attribute) (mvpa2.measures.rsa.product attribute) (mvpa2.misc.support.product attribute) (mvpa2.support.nibabel.afni_niml.BytesIO attribute) next() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) nfaces (mvpa2.support.nibabel.surf.Surface attribute) nfeatures (mvpa2.base.dataset.AttrDataset attribute) (mvpa2.base.learner.AttrDataset attribute) (mvpa2.datasets.base.AttrDataset attribute) (mvpa2.datasets.gifti.AttrDataset attribute) (mvpa2.featsel.helpers.AttrDataset attribute) (mvpa2.measures.base.AttrDataset attribute) (mvpa2.misc.surfing.queryengine.AttrDataset attribute) nfeatures_min (mvpa2.featsel.rfe.RFE attribute) NFoldPartitioner (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.clfs.meta) (class in mvpa2.generators.partition) (class in mvpa2.misc.plot) (class in mvpa2.misc.plot.base) (class in mvpa2.viz) NGroupPartitioner (class in mvpa2.generators.partition) ngroups (mvpa2.generators.partition.NGroupPartitioner attribute) NiBabel nic (mvpa2.misc.fsl.melodic.MelodicResults attribute) NIfTI niml_roi2roi_mapping() (in module mvpa2.support.nibabel.afni_niml_roi) NLAcholesky() (in module mvpa2.clfs.gpr) NLAsolve() (in module mvpa2.clfs.gpr) nlevels (mvpa2.atlases.base.PyMVPAAtlas attribute) (mvpa2.atlases.warehouse.PyMVPAAtlas attribute) nnlf() (mvpa2.clfs.stats.rv_semifrozen method) Node (class in mvpa2.base.learner) (class in mvpa2.base.node) (class in mvpa2.clfs.transerror) (class in mvpa2.generators.base) (class in mvpa2.generators.partition) (class in mvpa2.generators.permutation) (class in mvpa2.generators.resampling) (class in mvpa2.generators.splitters) (class in mvpa2.mappers.fx) (class in mvpa2.mappers.slicing) (class in mvpa2.measures.base)

node (mvpa2.measures.base.RepeatedMeasure attribute) node2faces (mvpa2.support.nibabel.surf.Surface attribute) node_areas (mvpa2.support.nibabel.surf.Surface attribute) node_normals (mvpa2.support.nibabel.surf.Surface attribute) nodebug() (in module mvpa2.testing) (in module mvpa2.testing.tools) nodes (mvpa2.base.learner.CompoundNode attribute) (mvpa2.base.node.CompoundNode attribute) nodes2voxel_attributes() (mvpa2.misc.surfing.surf_voxel_selection.VoxelSelector method) nodes_on_border() (mvpa2.support.nibabel.surf.Surface method) nodes_on_border_paths() (mvpa2.support.nibabel.surf.Surface method) NoisePerturbationSensitivity (class in mvpa2.measures.noiseperturbation) noisy_2d_fx() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) Nonparametric (class in mvpa2.clfs.stats) nonzero() (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) norm() (in module mvpa2.atlases.base) (in module mvpa2.atlases.warehouse) normal_feature_dataset() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) normalized() (in module mvpa2.support.nibabel.surf) nottest() (in module mvpa2.testing) (in module mvpa2.testing.tools) now() (mvpa2.base.report.datetime method) nrows (mvpa2.misc.bv.base.ColumnData attribute) (mvpa2.misc.bv.ColumnData attribute) (mvpa2.misc.fsl.ColumnData attribute) (mvpa2.misc.fsl.base.ColumnData attribute) (mvpa2.misc.io.ColumnData attribute) (mvpa2.misc.io.base.ColumnData attribute) nsamples (mvpa2.base.dataset.AttrDataset attribute) (mvpa2.base.learner.AttrDataset attribute) (mvpa2.datasets.base.AttrDataset attribute) (mvpa2.datasets.eep.EEPBin attribute) (mvpa2.datasets.gifti.AttrDataset attribute) (mvpa2.featsel.helpers.AttrDataset attribute) (mvpa2.measures.base.AttrDataset attribute) (mvpa2.misc.io.SampleAttributes attribute) (mvpa2.misc.io.base.SampleAttributes attribute) (mvpa2.misc.surfing.queryengine.AttrDataset attribute) nsamples_per_class (mvpa2.clfs.gda.GDA attribute) NStepsStopCrit (class in mvpa2.featsel.helpers) ntimepoints (mvpa2.datasets.eep.EEPBin attribute) null_dist (mvpa2.clfs.base.Measure attribute) (mvpa2.measures.base.Measure attribute) (mvpa2.measures.rsa.Measure attribute) (mvpa2.measures.searchlight.Measure attribute) (mvpa2.measures.winner.Measure attribute) null_prob (mvpa2.clfs.base.Measure attribute) (mvpa2.measures.base.Measure attribute) (mvpa2.measures.rsa.Measure attribute) (mvpa2.measures.searchlight.Measure attribute) (mvpa2.measures.winner.Measure attribute) null_t (mvpa2.clfs.base.Measure attribute) (mvpa2.measures.base.Measure attribute) (mvpa2.measures.rsa.Measure attribute) (mvpa2.measures.searchlight.Measure attribute) (mvpa2.measures.winner.Measure attribute) NullDist (class in mvpa2.clfs.stats) NumPy NumpyKernel (class in mvpa2.kernels) (class in mvpa2.kernels.base) (class in mvpa2.kernels.np) nvertices (mvpa2.support.nibabel.surf.Surface attribute) nvoxels (mvpa2.misc.surfing.volgeom.VolGeom attribute) nvoxels_mask (mvpa2.misc.surfing.volgeom.VolGeom attribute)

O

O (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute)

obj2hdf() (in module mvpa2.base.hdf5) OddEvenPartitioner (class in mvpa2.clfs.warehouse) (class in mvpa2.generators.partition) (class in mvpa2.testing.datasets) offsetbydepth (mvpa2.base.DebugLogger attribute) (mvpa2.base.verbosity.DebugLogger attribute) ok_() (in module mvpa2.testing) (in module mvpa2.testing.tools) OnceLogger (class in mvpa2.base) (class in mvpa2.base.verbosity) one_minus() (in module mvpa2.misc.transformers) one_minus_correlation() (in module mvpa2.clfs.distance) (in module mvpa2.measures.nnsearchlight) ones() (in module mvpa2.clfs.gda) (in module mvpa2.clfs.gnb) OneWayAnova (class in mvpa2.clfs.warehouse) (class in mvpa2.measures.anova) onsets (mvpa2.misc.fsl.base.FslEV3 attribute) (mvpa2.misc.fsl.FslEV3 attribute) OpenFMRI, [1] OpenFMRIDataset (class in mvpa2.datasets.sources) (class in mvpa2.datasets.sources.openfmri) OpenSUSE, [1] optimization Option (class in mvpa2.misc.cmdline) OptionGroup (class in mvpa2.misc.cmdline) OptionGroups (class in mvpa2.misc.cmdline) OptionParser (class in mvpa2.misc.cmdline) Options (class in mvpa2.misc.cmdline) order (mvpa2.mappers.fx.FxMapper attribute) origin (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) orthoview() (mvpa2.misc.plot.lightbox.SpatialImage method) oshape (mvpa2.datasets.base.StaticFeatureSelection attribute) (mvpa2.datasets.cosmo.StaticFeatureSelection attribute) (mvpa2.featsel.base.StaticFeatureSelection attribute) (mvpa2.featsel.ifs.StaticFeatureSelection attribute) (mvpa2.mappers.flatten.StaticFeatureSelection attribute) (mvpa2.measures.searchlight.StaticFeatureSelection attribute) OverAxis (class in mvpa2.misc.transformers)

P

p() (mvpa2.clfs.stats.NullDist method) pairwise_near_nodes() (mvpa2.support.nibabel.surf.Surface method) param_est (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute) (mvpa2.mappers.zscore.ZScoreMapper attribute) Parameter (class in mvpa2.algorithms.group_clusterthr) (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.param) (class in mvpa2.clfs.base) (class in mvpa2.clfs.gda) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.meta) (class in mvpa2.clfs.smlr) (class in mvpa2.kernels.base) (class in mvpa2.kernels.libsvm) (class in mvpa2.kernels.np) (class in mvpa2.kernels.sg) (class in mvpa2.mappers.detrend) (class in mvpa2.mappers.filters) (class in mvpa2.mappers.fx) (class in mvpa2.mappers.glm) (class in mvpa2.mappers.procrustean) (class in mvpa2.measures.rsa) ParameterCollection (class in mvpa2.base.state) params (mvpa2.algorithms.hyperalignment.ZScoreMapper attribute) (mvpa2.mappers.zscore.ZScoreMapper attribute) parse() (mvpa2.base.externals.SmartVersion method) (mvpa2.misc.support.SmartVersion method) parse_args() (mvpa2.misc.cmdline.OptionParser method) parse_status() (in module mvpa2.base.verbosity) partial (class in mvpa2.measures.winner) Partitioner (class in mvpa2.generators.partition) partitioner (mvpa2.clfs.meta.SplitClassifier attribute) (mvpa2.clfs.warehouse.SplitClassifier attribute) pass_attr (mvpa2.base.learner.Node attribute) (mvpa2.base.node.Node attribute) (mvpa2.clfs.transerror.Node attribute) (mvpa2.generators.base.Node attribute) (mvpa2.generators.partition.Node attribute) (mvpa2.generators.permutation.Node attribute) (mvpa2.generators.resampling.Node attribute) (mvpa2.generators.splitters.Node attribute) (mvpa2.mappers.fx.Node attribute) (mvpa2.mappers.slicing.Node attribute) (mvpa2.measures.base.Node attribute) path (mvpa2.misc.fsl.melodic.MelodicResults attribute) pathjoin() (in module mvpa2) (in module mvpa2.base.config) (in module mvpa2.base.info) (in module mvpa2.base.report) (in module mvpa2.datasets.sources) (in module mvpa2.datasets.sources.native) (in module mvpa2.misc.fsl) (in module mvpa2.misc.fsl.flobs) (in module mvpa2.misc.support) (in module mvpa2.support.nibabel.afni_suma_spec) (in module mvpa2.support.nibabel.surf_caret) (in module mvpa2.testing) (in module mvpa2.testing.datasets) (in module mvpa2.testing.tools) PCAMapper (class in mvpa2.mappers.mdp_adaptor) PDist (class in mvpa2.measures.rsa) pdist() (in module mvpa2.measures.rsa) PDistConsistency (class in mvpa2.measures.rsa) PDistTargetSimilarity (class in mvpa2.measures.rsa) pearson_correlation() (in module mvpa2.measures.corrcoef) pearsonr() (in module mvpa2.measures.rsa) (in module mvpa2.misc.errorfx) percent_correct (mvpa2.clfs.base.ConfusionMatrix attribute) (mvpa2.clfs.transerror.ConfusionMatrix attribute) permutation, [1], [2] pial_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute) Pioff() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) (in module mvpa2.misc.plot.lightbox) Pion() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) (in module mvpa2.misc.plot.lightbox) pl_axes() (in module mvpa2.misc.plot.scatter) plot() (mvpa2.clfs.base.ConfusionMatrix method) (mvpa2.clfs.base.RegressionStatistics method) (mvpa2.clfs.transerror.ConfusionMatrix method) (mvpa2.clfs.transerror.ROCCurve method) (mvpa2.clfs.transerror.RegressionStatistics method) (mvpa2.datasets.miscfx.SequenceStats method) (mvpa2.misc.fsl.FslGLMDesign method) (mvpa2.misc.fsl.McFlirtParams method) (mvpa2.misc.fsl.base.FslGLMDesign method) (mvpa2.misc.fsl.base.McFlirtParams method) plot_bars() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_dataset_chunks() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_decision_boundary_2d() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_distribution_matches() (in module mvpa2.clfs.stats) plot_erp() (in module mvpa2.misc.plot.erp) plot_erps() (in module mvpa2.misc.plot.erp) plot_err_line() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_err_line_missing() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_feature_hist() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) plot_head_outline() (in module mvpa2.misc.plot.topo) plot_head_topography() (in module mvpa2.misc.plot.topo) plot_lightbox() (in module mvpa2.misc.plot.lightbox) plot_samples_distance() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base)

plot_scatter() (in module mvpa2.misc.plot.scatter) plot_scatter_files() (in module mvpa2.misc.plot.scatter) plot_scatter_matrix() (in module mvpa2.misc.plot.scatter) plotmotionqc plotting plotting example PLR (class in mvpa2.clfs.plr) (class in mvpa2.clfs.warehouse) PLRWeights (class in mvpa2.clfs.plr) pmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) pnorm_w() (in module mvpa2.clfs.distance) (in module mvpa2.measures.irelief) pnorm_w_python() (in module mvpa2.clfs.distance) poly_detrend() (in module mvpa2.mappers.detrend) PolyDetrendMapper (class in mvpa2.mappers.detrend) PolyKernel (class in mvpa2.kernels.np) PolyLSKernel (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.libsvm) PolySGKernel (class in mvpa2.kernels.sg) poslabels (mvpa2.clfs.meta.BinaryClassifier attribute) postproc (mvpa2.base.learner.Node attribute) (mvpa2.base.node.Node attribute) (mvpa2.clfs.transerror.Node attribute) (mvpa2.generators.base.Node attribute) (mvpa2.generators.partition.Node attribute) (mvpa2.generators.permutation.Node attribute) (mvpa2.generators.resampling.Node attribute) (mvpa2.generators.splitters.Node attribute) (mvpa2.mappers.fx.Node attribute) (mvpa2.mappers.slicing.Node attribute) (mvpa2.measures.base.Node attribute) PrecomputedKernel (class in mvpa2.kernels) (class in mvpa2.kernels.base) PrecomputedSGKernel (class in mvpa2.kernels.sg) predict() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.testing.clfs.Classifier method) prediction_target_matches() (in module mvpa2.misc.errorfx) PredictionsCombiner (class in mvpa2.clfs.meta) prep-afni-surf prep-fmri preproc preprocessed_dataset() (in module mvpa2.datasets.base) print_help() (mvpa2.misc.cmdline.OptionParser method) print_registered() (mvpa2.base.verbosity.SetLogger method) (mvpa2.clfs.warehouse.Warehouse method) print_usage() (mvpa2.misc.cmdline.OptionParser method) print_version() (mvpa2.misc.cmdline.OptionParser method) printsetid (mvpa2.base.verbosity.SetLogger attribute) priors (mvpa2.clfs.gda.GDA attribute) (mvpa2.clfs.gnb.GNB attribute) (mvpa2.clfs.warehouse.GNB attribute) process() (mvpa2.misc.cmdline.Option method) Processing object ProcrusteanMapper (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.mappers.procrustean) product (class in mvpa2.measures.rsa) (class in mvpa2.misc.support) ProductFlattenMapper (class in mvpa2.mappers.flatten) progress tracking ProgressBar (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.base.progress) (class in mvpa2.measures.searchlight) (class in mvpa2.misc.surfing.surf_voxel_selection) (class in mvpa2.misc.surfing.volsurf) proj (mvpa2.mappers.mdp_adaptor.ICAMapper attribute) (mvpa2.mappers.mdp_adaptor.PCAMapper attribute) (mvpa2.mappers.procrustean.ProjectionMapper attribute) (mvpa2.mappers.projection.ProjectionMapper attribute) (mvpa2.mappers.prototype.ProjectionMapper attribute) (mvpa2.mappers.staticprojection.ProjectionMapper attribute) (mvpa2.mappers.svd.ProjectionMapper attribute) project_vertices() (mvpa2.support.nibabel.surf.Surface method) ProjectionMapper (class in mvpa2.mappers.procrustean) (class in mvpa2.mappers.projection) (class in mvpa2.mappers.prototype) (class in mvpa2.mappers.staticprojection) (class in mvpa2.mappers.svd) props (mvpa2.datasets.eep.DataReader attribute) (mvpa2.misc.io.DataReader attribute) (mvpa2.misc.io.base.DataReader attribute) PrototypeMapper (class in mvpa2.mappers.prototype) ProxyClassifier (class in mvpa2.clfs.meta) (class in mvpa2.featsel.rfe) ProxyClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) ProxyMeasure (class in mvpa2.featsel.rfe) (class in mvpa2.measures.base) Publications pure_multivariate_signal() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) PyMatlab PyMVPA poster pymvpa2 PyMVPAAtlas (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse)

Q

QDA (class in mvpa2.clfs.gda) (class in mvpa2.clfs.warehouse) query() (mvpa2.algorithms.searchlight_hyperalignment.IndexQueryEngine method) (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.atlases.base.XMLBasedAtlas method) (mvpa2.atlases.fsl.XMLBasedAtlas method) (mvpa2.atlases.warehouse.XMLBasedAtlas method) (mvpa2.datasets.cosmo.CosmoQueryEngine method) (mvpa2.datasets.cosmo.QueryEngineInterface method) (mvpa2.measures.gnbsearchlight.IndexQueryEngine method) (mvpa2.measures.nnsearchlight.IndexQueryEngine method) (mvpa2.measures.searchlight.IndexQueryEngine method) (mvpa2.misc.data_generators.IndexQueryEngine method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.IndexQueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.surfing.queryengine.QueryEngineInterface method) (mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) (mvpa2.testing.datasets.IndexQueryEngine method)

query_byid() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.datasets.cosmo.CosmoQueryEngine method) (mvpa2.datasets.cosmo.QueryEngineInterface method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.QueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.surfing.queryengine.QueryEngineInterface method) (mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method) QueryEngine (class in mvpa2.misc.neighborhood) queryengine (mvpa2.measures.searchlight.BaseSearchlight attribute) (mvpa2.misc.neighborhood.CachedQueryEngine attribute) QueryEngineInterface (class in mvpa2.datasets.cosmo) (class in mvpa2.misc.neighborhood) (class in mvpa2.misc.surfing.queryengine)

R

R radius (mvpa2.algorithms.searchlight_hyperalignment.Sphere attribute) (mvpa2.measures.gnbsearchlight.Sphere attribute) (mvpa2.measures.nnsearchlight.Sphere attribute) (mvpa2.measures.searchlight.Sphere attribute) (mvpa2.misc.neighborhood.Sphere attribute) (mvpa2.misc.surfing.volgeom.Sphere attribute) raises() (in module mvpa2.testing) (in module mvpa2.testing.tools) random number generation random_affine_transformation() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) random_samples() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) RandomClassifier (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) RangeElementSelector (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.helpers) rank_order() (in module mvpa2.misc.transformers) rankdata() (in module mvpa2.measures.rsa) RationalQuadraticKernel (class in mvpa2.kernels.np) rawniml2annot() (in module mvpa2.support.nibabel.afni_niml_annot) rawniml2dset() (in module mvpa2.support.nibabel.afni_niml_dset) rawniml2string() (in module mvpa2.support.nibabel.afni_niml) RbfCSVMC (class in mvpa2.clfs.svm) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) RbfKernel (class in mvpa2.kernels.np) RbfLSKernel (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.libsvm) RbfNuSVMC (class in mvpa2.clfs.svm) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) RbfSGKernel (class in mvpa2.kernels.sg) RbfSVMKernel (in module mvpa2.clfs.svm) (in module mvpa2.clfs.warehouse) (in module mvpa2.testing.clfs) rcdf() (mvpa2.clfs.stats.MCNullDist method) (mvpa2.clfs.stats.Nonparametric method) (mvpa2.clfs.stats.NullDist method) read() (in module mvpa2.datasets.niml) (in module mvpa2.support.nibabel.afni_niml) (in module mvpa2.support.nibabel.afni_niml_annot) (in module mvpa2.support.nibabel.afni_niml_dset) (in module mvpa2.support.nibabel.afni_niml_roi) (in module mvpa2.support.nibabel.afni_suma_1d) (in module mvpa2.support.nibabel.afni_suma_spec) (in module mvpa2.support.nibabel.surf) (in module mvpa2.support.nibabel.surf_caret) (in module mvpa2.support.nibabel.surf_fs_asc) (in module mvpa2.support.nibabel.surf_gifti) (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) read1() (mvpa2.support.nibabel.afni_niml.BytesIO method) read_fsl_design() (in module mvpa2.misc.fsl) (in module mvpa2.misc.fsl.base) read_mapping() (in module mvpa2.support.nibabel.afni_niml_roi) read_topology() (in module mvpa2.support.nibabel.surf_caret) readable() (mvpa2.support.nibabel.afni_niml.BytesIO method) readinto() (mvpa2.support.nibabel.afni_niml.BytesIO method) readline() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) readlines() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) recommended software recon (mvpa2.mappers.mdp_adaptor.ICAMapper attribute) (mvpa2.mappers.mdp_adaptor.PCAMapper attribute) (mvpa2.mappers.procrustean.ProjectionMapper attribute) (mvpa2.mappers.projection.ProjectionMapper attribute) (mvpa2.mappers.prototype.ProjectionMapper attribute) (mvpa2.mappers.staticprojection.ProjectionMapper attribute) (mvpa2.mappers.svd.ProjectionMapper attribute) redirecting output reference_level (mvpa2.atlases.base.ReferencesAtlas attribute) (mvpa2.atlases.ReferencesAtlas attribute) (mvpa2.atlases.warehouse.ReferencesAtlas attribute) references ReferencesAtlas (class in mvpa2.atlases) (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) ReferencesLevel (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) register() (mvpa2.base.verbosity.SetLogger method) register_metric() (mvpa2.base.DebugLogger method) (mvpa2.base.verbosity.DebugLogger method) registered (mvpa2.base.verbosity.SetLogger attribute) Regression (class in mvpa2.measures.rsa) RegressionAsClassifier (class in mvpa2.clfs.meta) (class in mvpa2.clfs.warehouse) RegressionAsClassifierSensitivityAnalyzer (class in mvpa2.clfs.meta) (class in mvpa2.measures.base) RegressionStatistics (class in mvpa2.clfs.base) (class in mvpa2.clfs.transerror) relative_rms_error() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) RelativeTime (class in mvpa2.base.verbosity) release notes, [1] releases reload() (mvpa2.base.config.ConfigManager method) (mvpa2.base.ConfigManager method) relvar_per_ic (mvpa2.misc.fsl.melodic.MelodicResults attribute) remove_invariant_features() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) remove_nonfinite_features() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) repeat_cluster_vals() (in module mvpa2.algorithms.group_clusterthr) RepeatedMeasure (class in mvpa2.measures.base) Repeater (class in mvpa2.featsel.rfe) (class in mvpa2.generators.base) replace() (mvpa2.base.report.datetime method) Report (class in mvpa2.base.report) reposition_hemisphere_pairs() (in module mvpa2.support.nibabel.surf) repredict() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.testing.clfs.Classifier method) required software resample() (in module mvpa2.mappers.filters) reseed_rng() (in module mvpa2.testing) (in module mvpa2.testing.datasets) (in module mvpa2.testing.tools) reset() (mvpa2.algorithms.hyperalignment.ClassWithCollections method) (mvpa2.algorithms.hyperalignment.ConditionalAttribute method) (mvpa2.algorithms.searchlight_hyperalignment.ClassWithCollections method) (mvpa2.base.attributes.ConditionalAttribute method) (mvpa2.base.attributes.IndexedCollectable method) (mvpa2.base.learner.ConditionalAttribute method) (mvpa2.base.node.ClassWithCollections method) (mvpa2.base.node.ConditionalAttribute method) (mvpa2.base.param.IndexedCollectable method) (mvpa2.base.state.ClassWithCollections method) (mvpa2.base.state.Collection method) (mvpa2.base.state.ConditionalAttribute method) (mvpa2.base.state.IndexedCollectable method) (mvpa2.clfs.base.ConditionalAttribute method) (mvpa2.clfs.blr.ConditionalAttribute method) (mvpa2.clfs.gda.ConditionalAttribute method) (mvpa2.clfs.gnb.ConditionalAttribute method) (mvpa2.clfs.gpr.ConditionalAttribute method) (mvpa2.clfs.gpr.GeneralizedLinearKernel method) (mvpa2.clfs.gpr.SquaredExponentialKernel method) (mvpa2.clfs.knn.ConditionalAttribute method) (mvpa2.clfs.mass.ConditionalAttribute method) (mvpa2.clfs.meta.ClassWithCollections method) (mvpa2.clfs.meta.ConditionalAttribute method) (mvpa2.clfs.plr.ConditionalAttribute method) (mvpa2.clfs.smlr.ConditionalAttribute method) (mvpa2.clfs.stats.ClassWithCollections method) (mvpa2.clfs.stats.ConditionalAttribute method) (mvpa2.clfs.transerror.ClassWithCollections method) (mvpa2.clfs.transerror.ConditionalAttribute method) (mvpa2.clfs.transerror.SummaryStatistics method) (mvpa2.clfs.warehouse.GeneralizedLinearKernel method) (mvpa2.clfs.warehouse.SquaredExponentialKernel method) (mvpa2.featsel.base.ConditionalAttribute method) (mvpa2.featsel.helpers.ClassWithCollections method) (mvpa2.featsel.helpers.ConditionalAttribute method) (mvpa2.featsel.ifs.ConditionalAttribute method) (mvpa2.featsel.rfe.ConditionalAttribute method) (mvpa2.kernels.base.ClassWithCollections method) (mvpa2.kernels.np.ConditionalAttribute method) (mvpa2.kernels.np.GeneralizedLinearKernel method) (mvpa2.kernels.np.SquaredExponentialKernel method) (mvpa2.measures.base.ConditionalAttribute method) (mvpa2.measures.searchlight.ConditionalAttribute method) (mvpa2.misc.transformers.ClassWithCollections method) (mvpa2.misc.transformers.ConditionalAttribute method)

reset_changed_temporarily() (mvpa2.base.state.ConditionalAttributesCollection method) reset_value() (mvpa2.algorithms.group_clusterthr.Parameter method) (mvpa2.algorithms.hyperalignment.Parameter method) (mvpa2.algorithms.searchlight_hyperalignment.Parameter method) (mvpa2.base.param.Parameter method) (mvpa2.base.state.ParameterCollection method) (mvpa2.clfs.base.Parameter method) (mvpa2.clfs.gda.Parameter method) (mvpa2.clfs.glmnet.Parameter method) (mvpa2.clfs.gnb.Parameter method) (mvpa2.clfs.gpr.Parameter method) (mvpa2.clfs.meta.Parameter method) (mvpa2.clfs.smlr.Parameter method) (mvpa2.kernels.base.Parameter method) (mvpa2.kernels.libsvm.Parameter method) (mvpa2.kernels.np.Parameter method) (mvpa2.kernels.sg.Parameter method) (mvpa2.mappers.detrend.Parameter method) (mvpa2.mappers.filters.Parameter method) (mvpa2.mappers.fx.Parameter method) (mvpa2.mappers.glm.Parameter method) (mvpa2.mappers.procrustean.Parameter method) (mvpa2.measures.rsa.Parameter method) resize() (mvpa2.algorithms.group_clusterthr.dok_matrix method) resolution (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) (mvpa2.base.report.datetime attribute) retrain() (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.testing.clfs.Classifier method) reuse_absolute_path() (in module mvpa2.atlases.base) (in module mvpa2.atlases.fsl) (in module mvpa2.atlases.warehouse) (in module mvpa2.misc.support) reuse_neighbors (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute) (mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute) reverse() (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.Mapper method) (mvpa2.mappers.boxcar.Mapper method) (mvpa2.mappers.detrend.Mapper method) (mvpa2.mappers.filters.Mapper method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.flatten.Mapper method) (mvpa2.mappers.fx.Mapper method) (mvpa2.mappers.fxy.Mapper method) (mvpa2.mappers.glm.Mapper method) (mvpa2.mappers.mdp_adaptor.Mapper method) (mvpa2.mappers.projection.Mapper method) (mvpa2.mappers.shape.Mapper method) (mvpa2.mappers.skl_adaptor.Mapper method) (mvpa2.mappers.slicing.Mapper method) (mvpa2.mappers.som.Mapper method) (mvpa2.mappers.wavelet.Mapper method) (mvpa2.mappers.zscore.Mapper method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.misc.surfing.volgeom.ChainMapper method) reverse1() (mvpa2.algorithms.benchmarks.hyperalignment.BoxcarMapper method) (mvpa2.algorithms.benchmarks.hyperalignment.IdentityMapper method) (mvpa2.algorithms.group_clusterthr.IdentityMapper method) (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.datasets.eventrelated.BoxcarMapper method) (mvpa2.featsel.base.FeatureSelection method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.IdentityMapper method) (mvpa2.mappers.base.Mapper method) (mvpa2.mappers.boxcar.BoxcarMapper method) (mvpa2.mappers.boxcar.Mapper method) (mvpa2.mappers.detrend.Mapper method) (mvpa2.mappers.filters.Mapper method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.flatten.Mapper method) (mvpa2.mappers.fx.Mapper method) (mvpa2.mappers.fxy.Mapper method) (mvpa2.mappers.glm.Mapper method) (mvpa2.mappers.mdp_adaptor.Mapper method) (mvpa2.mappers.projection.Mapper method) (mvpa2.mappers.shape.Mapper method) (mvpa2.mappers.skl_adaptor.Mapper method) (mvpa2.mappers.slicing.Mapper method) (mvpa2.mappers.som.Mapper method) (mvpa2.mappers.wavelet.Mapper method) (mvpa2.mappers.zscore.Mapper method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.misc.plot.erp.BoxcarMapper method) (mvpa2.misc.surfing.volgeom.ChainMapper method) reverse_rank_order() (in module mvpa2.misc.transformers) review RFE (class in mvpa2.featsel.rfe) rfe_history_to_maps() (in module mvpa2.misc.support) RidgeReg (class in mvpa2.clfs.ridge) rms_error() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) RNG ROCCurve (class in mvpa2.clfs.transerror) rocs (mvpa2.clfs.transerror.ROCCurve attribute) roi_ids (mvpa2.measures.searchlight.BaseSearchlight attribute) root_mean_power_fx() (in module mvpa2.clfs.transerror) (in module mvpa2.misc.errorfx) rotate() (mvpa2.support.nibabel.surf.Surface method) RPy, [1] rsa_fmri run() (in module mvpa2.tests) run_tests_using_nose() (in module mvpa2.tests) run_voxel_selection() (in module mvpa2.misc.surfing.surf_voxel_selection) rv_semifrozen (class in mvpa2.clfs.stats)

S

S (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) safe_str() (in module mvpa2.base.dochelpers) safe_write() (in module mvpa2.misc.io) (in module mvpa2.misc.io.base) (in module mvpa2.support.nibabel.afni_niml) (in module mvpa2.support.nibabel.surf_gifti) SafeConfigParser (class in mvpa2.base.config) same_geometry() (mvpa2.misc.surfing.volgeom.VolGeom method) same_mask() (mvpa2.misc.surfing.volgeom.VolGeom method) same_shape() (mvpa2.misc.surfing.volgeom.VolGeom method) same_states() (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) same_topology() (mvpa2.support.nibabel.surf.Surface method) SameSignClassifier (class in mvpa2.testing.clfs) Sample Sample attribute sample_loser_measure() (in module mvpa2.measures.winner) sample_winner_measure() (in module mvpa2.measures.winner) SampleAttribute (class in mvpa2.base.collections) SampleAttributes (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) SampleAttributesCollection (class in mvpa2.base.collections) (class in mvpa2.base.dataset) (class in mvpa2.base.node) (class in mvpa2.datasets.gifti) (class in mvpa2.datasets.niml) (class in mvpa2.generators.base) samples (mvpa2.datasets.base.HollowSamples attribute) (mvpa2.testing.datasets.HollowSamples attribute) SampleSliceMapper (class in mvpa2.mappers.slicing) SamplesLookup (class in mvpa2.kernels.base) (class in mvpa2.misc.sampleslookup) save() (in module mvpa2.base.dataset) (mvpa2.base.ConfigManager method) (mvpa2.base.config.ConfigManager method) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.base.report.Report method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) saveload_warehouse() (in module mvpa2.testing.datasets) savemat() (in module mvpa2.datasets.cosmo) scatter scatter_neighborhoods() (in module mvpa2.misc.neighborhood) SciPy Searchlight searchlight, [1], [2], [3] Searchlight (class in mvpa2.datasets.cosmo) (class in mvpa2.measures.searchlight) SearchlightHyperalignment (class in mvpa2.algorithms.searchlight_hyperalignment) second (mvpa2.base.report.datetime attribute) second_axis_mean() (in module mvpa2.misc.transformers) seconds2prettystring() (in module mvpa2.base.progress) (in module mvpa2.misc.surfing.surf_voxel_selection) seed() (in module mvpa2) seek() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) seekable() (mvpa2.support.nibabel.afni_niml.BytesIO method) select select() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) select_samples() (mvpa2.misc.bv.base.ColumnData method) (mvpa2.misc.bv.ColumnData method) (mvpa2.misc.fsl.ColumnData method) (mvpa2.misc.fsl.base.ColumnData method) (mvpa2.misc.io.ColumnData method) (mvpa2.misc.io.base.ColumnData method) selection_strategy (mvpa2.generators.partition.Partitioner attribute) selector (mvpa2.featsel.base.SplitSamplesProbabilityMapper attribute) selectors (mvpa2.featsel.base.CombinedFeatureSelection attribute) self-organizing map Sensitivity sensitivity, [1] Sensitivity (class in mvpa2.clfs.enet) (class in mvpa2.clfs.glmnet) (class in mvpa2.clfs.gnb) (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.lars) (class in mvpa2.clfs.plr) (class in mvpa2.clfs.smlr) (class in mvpa2.featsel.rfe) (class in mvpa2.measures.base) Sensitivity Map sensitivity_analyzer (mvpa2.clfs.warehouse.SensitivityBasedFeatureSelection attribute) (mvpa2.featsel.base.SensitivityBasedFeatureSelection attribute) (mvpa2.featsel.base.SplitSamplesProbabilityMapper attribute) SensitivityBasedFeatureSelection (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.base) SensorLocations (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) sentence_end_re (mvpa2.base.state.TextWrapper attribute) SequenceCollectable (class in mvpa2.base.collections) SequenceStats (class in mvpa2.datasets.miscfx) set() (mvpa2.base.config.SafeConfigParser method) set_active_from_string() (mvpa2.base.verbosity.SetLogger method) set_attr() (mvpa2.algorithms.group_clusterthr.Dataset method) (mvpa2.algorithms.hyperalignment.Dataset method) (mvpa2.clfs.base.Dataset method) (mvpa2.clfs.glmnet.Dataset method) (mvpa2.clfs.gnb.Dataset method) (mvpa2.clfs.gpr.Dataset method) (mvpa2.clfs.knn.Dataset method) (mvpa2.clfs.lars.Dataset method) (mvpa2.clfs.meta.Dataset method) (mvpa2.clfs.plr.Dataset method) (mvpa2.clfs.smlr.Dataset method) (mvpa2.clfs.stats.Dataset method) (mvpa2.clfs.transerror.Dataset method) (mvpa2.datasets.base.Dataset method) (mvpa2.datasets.cosmo.Dataset method) (mvpa2.datasets.eeglab.Dataset method) (mvpa2.datasets.eep.Dataset method) (mvpa2.datasets.eventrelated.Dataset method) (mvpa2.datasets.formats.Dataset method) (mvpa2.datasets.gifti.Dataset method) (mvpa2.datasets.miscfx.Dataset method) (mvpa2.datasets.mri.Dataset method) (mvpa2.datasets.niml.Dataset method) (mvpa2.mappers.filters.Dataset method) (mvpa2.mappers.fx.Dataset method) (mvpa2.mappers.fxy.Dataset method) (mvpa2.mappers.glm.Dataset method) (mvpa2.mappers.shape.Dataset method) (mvpa2.mappers.zscore.Dataset method) (mvpa2.measures.anova.Dataset method) (mvpa2.measures.base.Dataset method) (mvpa2.measures.corrcoef.Dataset method) (mvpa2.measures.irelief.Dataset method) (mvpa2.measures.noiseperturbation.Dataset method) (mvpa2.measures.rsa.Dataset method) (mvpa2.measures.searchlight.Dataset method) (mvpa2.measures.statsmodels_adaptor.Dataset method) (mvpa2.measures.winner.Dataset method) (mvpa2.misc.data_generators.Dataset method) (mvpa2.misc.plot.flat_surf.Dataset method) (mvpa2.testing.clfs.Dataset method) (mvpa2.testing.datasets.Dataset method) set_coordT() (mvpa2.atlases.base.XMLBasedAtlas method) (mvpa2.atlases.fsl.XMLBasedAtlas method) (mvpa2.atlases.warehouse.XMLBasedAtlas method) set_data_dtype() (mvpa2.misc.plot.lightbox.SpatialImage method) set_default() (mvpa2.misc.cmdline.OptionParser method) set_defaults() (mvpa2.misc.cmdline.OptionParser method) set_distance() (mvpa2.atlases.base.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) (mvpa2.atlases.warehouse.ReferencesAtlas method) set_hyperparameters() (mvpa2.clfs.blr.BLR method) (mvpa2.clfs.gpr.GPR method) (mvpa2.clfs.gpr.SquaredExponentialKernel method) (mvpa2.clfs.warehouse.BLR method) (mvpa2.clfs.warehouse.GPR method) (mvpa2.clfs.warehouse.SquaredExponentialKernel method) (mvpa2.kernels.np.Matern_3_2Kernel method) (mvpa2.kernels.np.RationalQuadraticKernel method) (mvpa2.kernels.np.SquaredExponentialKernel method) set_labels_map() (mvpa2.clfs.base.ConfusionMatrix method) (mvpa2.clfs.transerror.ConfusionMatrix method) set_length_check() (mvpa2.base.collections.SequenceCollectable method) (mvpa2.base.collections.UniformLengthCollection method) set_output_dataset_attributes() (mvpa2.datasets.cosmo.CosmoQueryEngine method) set_postproc() (mvpa2.base.learner.Node method) (mvpa2.base.node.Node method) (mvpa2.clfs.transerror.Node method) (mvpa2.generators.base.Node method) (mvpa2.generators.partition.Node method) (mvpa2.generators.permutation.Node method) (mvpa2.generators.resampling.Node method) (mvpa2.generators.splitters.Node method) (mvpa2.mappers.fx.Node method) (mvpa2.mappers.slicing.Node method) (mvpa2.measures.base.Node method) set_process_default_values() (mvpa2.misc.cmdline.OptionParser method) set_reference_level() (mvpa2.atlases.base.ReferencesAtlas method) (mvpa2.atlases.ReferencesAtlas method) (mvpa2.atlases.warehouse.ReferencesAtlas method) set_space() (mvpa2.base.learner.Node method) (mvpa2.base.node.Node method) (mvpa2.clfs.transerror.Node method) (mvpa2.generators.base.Node method) (mvpa2.generators.partition.Node method) (mvpa2.generators.permutation.Node method) (mvpa2.generators.resampling.Node method) (mvpa2.generators.splitters.Node method) (mvpa2.mappers.fx.Node method) (mvpa2.mappers.slicing.Node method) (mvpa2.measures.base.Node method) set_title() (mvpa2.misc.cmdline.OptionGroup method) set_underlay() (mvpa2.misc.plot.flat_surf.FlatSurfacePlotter method) set_usage() (mvpa2.misc.cmdline.OptionParser method) SetLogger (class in mvpa2.base.verbosity) setnewidcode() (in module mvpa2.support.nibabel.afni_niml) sets (mvpa2.clfs.transerror.SummaryStatistics attribute) settings setup_module() (in module mvpa2.clfs.sg) (in module mvpa2.tests) SGKernel (class in mvpa2.kernels.sg) shape (mvpa2.algorithms.benchmarks.hyperalignment.FlattenMapper attribute) (mvpa2.base.dataset.AttrDataset attribute) (mvpa2.base.learner.AttrDataset attribute) (mvpa2.datasets.base.AttrDataset attribute) (mvpa2.datasets.base.FlattenMapper attribute) (mvpa2.datasets.base.HollowSamples attribute) (mvpa2.datasets.cosmo.FlattenMapper attribute) (mvpa2.datasets.eeglab.FlattenMapper attribute) (mvpa2.datasets.eventrelated.FlattenMapper attribute) (mvpa2.datasets.gifti.AttrDataset attribute) (mvpa2.datasets.mri.FlattenMapper attribute) (mvpa2.featsel.helpers.AttrDataset attribute) (mvpa2.mappers.flatten.FlattenMapper attribute) (mvpa2.measures.base.AttrDataset attribute) (mvpa2.misc.plot.lightbox.SpatialImage attribute) (mvpa2.misc.surfing.queryengine.AttrDataset attribute) (mvpa2.misc.surfing.volgeom.VolGeom attribute) (mvpa2.testing.datasets.HollowSamples attribute) Shogun short_description() (mvpa2.algorithms.group_clusterthr.EnsureChoice method) (mvpa2.algorithms.group_clusterthr.EnsureRange method) (mvpa2.algorithms.hyperalignment.AltConstraints method) (mvpa2.algorithms.hyperalignment.Constraint method) (mvpa2.algorithms.hyperalignment.Constraints method) (mvpa2.algorithms.hyperalignment.EnsureBool method) (mvpa2.algorithms.hyperalignment.EnsureChoice method) (mvpa2.algorithms.hyperalignment.EnsureDType method) (mvpa2.algorithms.hyperalignment.EnsureListOf method) (mvpa2.algorithms.hyperalignment.EnsureNone method) (mvpa2.algorithms.hyperalignment.EnsureRange method) (mvpa2.algorithms.hyperalignment.EnsureStr method) (mvpa2.algorithms.hyperalignment.EnsureTupleOf method) (mvpa2.algorithms.searchlight_hyperalignment.AltConstraints method) (mvpa2.algorithms.searchlight_hyperalignment.Constraint method) (mvpa2.algorithms.searchlight_hyperalignment.Constraints method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureBool method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureChoice method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureDType method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureListOf method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureNone method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureRange method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureStr method) (mvpa2.algorithms.searchlight_hyperalignment.EnsureTupleOf method) (mvpa2.base.constraints.AltConstraints method) (mvpa2.base.constraints.Constraint method) (mvpa2.base.constraints.Constraints method) (mvpa2.base.constraints.EnsureBool method) (mvpa2.base.constraints.EnsureChoice method) (mvpa2.base.constraints.EnsureDType method) (mvpa2.base.constraints.EnsureListOf method) (mvpa2.base.constraints.EnsureNone method) (mvpa2.base.constraints.EnsureRange method) (mvpa2.base.constraints.EnsureStr method) (mvpa2.base.constraints.EnsureTupleOf method) (mvpa2.clfs.gda.EnsureChoice method) (mvpa2.clfs.glmnet.AltConstraints method) (mvpa2.clfs.glmnet.Constraint method) (mvpa2.clfs.glmnet.Constraints method) (mvpa2.clfs.glmnet.EnsureBool method) (mvpa2.clfs.glmnet.EnsureChoice method) (mvpa2.clfs.glmnet.EnsureDType method) (mvpa2.clfs.glmnet.EnsureListOf method) (mvpa2.clfs.glmnet.EnsureNone method) (mvpa2.clfs.glmnet.EnsureRange method) (mvpa2.clfs.glmnet.EnsureStr method) (mvpa2.clfs.glmnet.EnsureTupleOf method) (mvpa2.clfs.gnb.EnsureChoice method) (mvpa2.clfs.gpr.EnsureNone method) (mvpa2.clfs.gpr.EnsureRange method) (mvpa2.clfs.smlr.AltConstraints method) (mvpa2.clfs.smlr.Constraint method) (mvpa2.clfs.smlr.Constraints method) (mvpa2.clfs.smlr.EnsureBool method) (mvpa2.clfs.smlr.EnsureChoice method) (mvpa2.clfs.smlr.EnsureDType method) (mvpa2.clfs.smlr.EnsureListOf method) (mvpa2.clfs.smlr.EnsureNone method) (mvpa2.clfs.smlr.EnsureRange method) (mvpa2.clfs.smlr.EnsureStr method) (mvpa2.clfs.smlr.EnsureTupleOf method) (mvpa2.kernels.np.EnsureListOf method) (mvpa2.mappers.filters.EnsureChoice method) (mvpa2.mappers.filters.EnsureNone method) (mvpa2.mappers.fx.AltConstraints method) (mvpa2.mappers.fx.Constraint method) (mvpa2.mappers.fx.Constraints method) (mvpa2.mappers.fx.EnsureBool method) (mvpa2.mappers.fx.EnsureChoice method) (mvpa2.mappers.fx.EnsureDType method) (mvpa2.mappers.fx.EnsureListOf method) (mvpa2.mappers.fx.EnsureNone method) (mvpa2.mappers.fx.EnsureRange method) (mvpa2.mappers.fx.EnsureStr method) (mvpa2.mappers.fx.EnsureTupleOf method) (mvpa2.mappers.procrustean.EnsureChoice method) (mvpa2.measures.rsa.EnsureChoice method)

Sifter (class in mvpa2.generators.base) SigmoidLSKernel (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.libsvm) SillySensitivityAnalyzer (class in mvpa2.testing.clfs) Similarity (class in mvpa2.clfs.similarity) simple_hrf_dataset() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) SimpleSOMMapper (class in mvpa2.mappers.som) SimpleStatBaseSearchlight (class in mvpa2.measures.gnbsearchlight) (class in mvpa2.measures.nnsearchlight) sin_modulated() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets) single_gamma_hrf() (in module mvpa2.misc.data_generators) (in module mvpa2.misc.fx) (in module mvpa2.testing.datasets) single_or_plural() (in module mvpa2.base.dochelpers) SingleDimensionSimilarity (class in mvpa2.clfs.similarity) skip_if_no_external() (in module mvpa2.testing) (in module mvpa2.testing.tools) skipif() (in module mvpa2.testing) (in module mvpa2.testing.tools) SKLTransformer (class in mvpa2.mappers.skl_adaptor) SLcho_solve() (in module mvpa2.clfs.gpr) SLcholesky() (in module mvpa2.clfs.gpr) slicearg (mvpa2.featsel.base.SliceMapper attribute) (mvpa2.mappers.slicing.SliceMapper attribute) SliceMapper (class in mvpa2.featsel.base) (class in mvpa2.mappers.slicing) SmartVersion (class in mvpa2.base.externals) (class in mvpa2.misc.support) SMLR (class in mvpa2.clfs.smlr) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) SMLRWeights (class in mvpa2.clfs.smlr) (class in mvpa2.clfs.warehouse) smodes (mvpa2.misc.fsl.melodic.MelodicResults attribute) solve() (mvpa2.clfs.model_selector.ModelSelector method) SOM sorted (mvpa2.algorithms.searchlight_hyperalignment.IndexQueryEngine attribute) (mvpa2.measures.gnbsearchlight.IndexQueryEngine attribute) (mvpa2.measures.nnsearchlight.IndexQueryEngine attribute) (mvpa2.measures.searchlight.IndexQueryEngine attribute) (mvpa2.misc.data_generators.IndexQueryEngine attribute) (mvpa2.misc.neighborhood.IndexQueryEngine attribute) (mvpa2.testing.datasets.IndexQueryEngine attribute) source (mvpa2.atlases.base.PyMVPAAtlas attribute) (mvpa2.atlases.fsl.FSLAtlas attribute) (mvpa2.atlases.warehouse.FSLAtlas attribute) (mvpa2.atlases.warehouse.PyMVPAAtlas attribute) (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute) source package source2nearest_target() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) space (mvpa2.atlases.base.PyMVPAAtlas attribute) (mvpa2.atlases.warehouse.PyMVPAAtlas attribute) (mvpa2.base.learner.Node attribute) (mvpa2.base.node.Node attribute) (mvpa2.clfs.transerror.Node attribute) (mvpa2.generators.base.Node attribute) (mvpa2.generators.partition.Node attribute) (mvpa2.generators.permutation.Node attribute) (mvpa2.generators.resampling.Node attribute) (mvpa2.generators.splitters.Node attribute) (mvpa2.mappers.fx.Node attribute) (mvpa2.mappers.slicing.Node attribute) (mvpa2.measures.base.Node attribute) space_flavor (mvpa2.atlases.base.PyMVPAAtlas attribute) (mvpa2.atlases.warehouse.PyMVPAAtlas attribute) spaceT (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) SpaceTransformation (class in mvpa2.atlases.base) (class in mvpa2.atlases.warehouse) sparse2full() (in module mvpa2.support.nibabel.afni_niml_dset) Spatial Discrimination Map (SDM) SpatialImage (class in mvpa2.misc.plot.lightbox) Sphere (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.measures.gnbsearchlight) (class in mvpa2.measures.nnsearchlight) (class in mvpa2.measures.searchlight) (class in mvpa2.misc.neighborhood) (class in mvpa2.misc.surfing.volgeom) sphere_gnbsearchlight() (in module mvpa2.measures.gnbsearchlight) sphere_m1nnsearchlight() (in module mvpa2.measures.nnsearchlight) sphere_searchlight() (in module mvpa2.measures.searchlight) split_by_connected_components() (mvpa2.support.nibabel.surf.Surface method) split_by_feature_attribute() (in module mvpa2.base.dataset) split_by_sample_attribute() (in module mvpa2.base.dataset) (in module mvpa2.featsel.base) split_comma_semicolon_lists() (in module mvpa2.misc.cmdline) split_kwargs() (in module mvpa2.misc.args) splitattr (mvpa2.generators.partition.Partitioner attribute) SplitClassifier (class in mvpa2.clfs.meta) (class in mvpa2.clfs.warehouse) SplitRFE (class in mvpa2.clfs.warehouse) (class in mvpa2.featsel.rfe) SplitSamplesProbabilityMapper (class in mvpa2.featsel.base) Splitter (class in mvpa2.algorithms.benchmarks.hyperalignment) (class in mvpa2.clfs.meta) (class in mvpa2.featsel.rfe) (class in mvpa2.generators.splitters) (class in mvpa2.mappers.filters) (class in mvpa2.measures.base) (class in mvpa2.misc.plot) (class in mvpa2.misc.plot.base) (class in mvpa2.viz) splitter (mvpa2.clfs.meta.SplitClassifier attribute) (mvpa2.clfs.warehouse.SplitClassifier attribute) (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) (mvpa2.measures.base.CrossValidation attribute) (mvpa2.measures.base.TransferMeasure attribute) (mvpa2.measures.gnbsearchlight.SimpleStatBaseSearchlight attribute) (mvpa2.measures.nnsearchlight.SimpleStatBaseSearchlight attribute) squared_euclidean_distance() (in module mvpa2.clfs.distance) (in module mvpa2.clfs.knn) (in module mvpa2.clfs.similarity) (in module mvpa2.kernels.np) (in module mvpa2.measures.nnsearchlight) (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) SquaredExponentialKernel (class in mvpa2.clfs.gpr) (class in mvpa2.clfs.warehouse) (class in mvpa2.kernels.np) squareform() (in module mvpa2.measures.rsa) stack_by_unique_feature_attribute() (in module mvpa2.base.dataset) stack_by_unique_sample_attribute() (in module mvpa2.base.dataset) standard_option_list (mvpa2.misc.cmdline.OptionParser attribute) start() (mvpa2.algorithms.searchlight_hyperalignment.ProgressBar method) (mvpa2.base.progress.ProgressBar method) (mvpa2.measures.searchlight.ProgressBar method) (mvpa2.misc.surfing.surf_voxel_selection.ProgressBar method) (mvpa2.misc.surfing.volsurf.ProgressBar method) StaticFeatureSelection (class in mvpa2.datasets.base) (class in mvpa2.datasets.cosmo) (class in mvpa2.featsel.base) (class in mvpa2.featsel.ifs) (class in mvpa2.mappers.flatten) (class in mvpa2.measures.searchlight) StaticMeasure (class in mvpa2.measures.base) StaticProjectionMapper (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.mappers.staticprojection) Statistical Discrimination Map (SDM) Statistical Learning statistical testing, [1] stats (mvpa2.clfs.transerror.SummaryStatistics attribute) steps (mvpa2.featsel.base.NBackHistoryStopCrit attribute) (mvpa2.featsel.helpers.NBackHistoryStopCrit attribute) (mvpa2.featsel.helpers.NStepsStopCrit attribute) (mvpa2.featsel.ifs.NBackHistoryStopCrit attribute) (mvpa2.featsel.rfe.NBackHistoryStopCrit attribute) stopping_criterion (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) StoppingCriterion (class in mvpa2.featsel.helpers) STORE_ACTIONS (mvpa2.misc.cmdline.Option attribute) StreamlineSimilarity (class in mvpa2.clfs.similarity) string2rawniml() (in module mvpa2.support.nibabel.afni_niml) StringIO (class in mvpa2.base.dochelpers) (class in mvpa2.base.info) (class in mvpa2.clfs.transerror) strip_nibabel() (in module mvpa2.datasets.mri) strip_strid() (in module mvpa2.base.dochelpers) (in module mvpa2.testing) (in module mvpa2.testing.tools) StripBoundariesSamples (class in mvpa2.mappers.slicing) strptime() (mvpa2.base.report.datetime method) sub() (in module mvpa2.misc.io.base) sub_surface() (mvpa2.support.nibabel.surf.Surface method) subtract() (mvpa2.algorithms.group_clusterthr.Counter method) subtract_mean() (in module mvpa2.mappers.fx) (in module mvpa2.misc.transformers) subtract_mean_feature() (in module mvpa2.mappers.fx) suggested software sum() (in module mvpa2.clfs.gda) (in module mvpa2.clfs.gnb) sum_duplicates() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) sum_of_abs() (in module mvpa2.mappers.fx) (in module mvpa2.misc.transformers) sum_sample() (in module mvpa2.mappers.fx) summaries (mvpa2.clfs.transerror.SummaryStatistics attribute) summary() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.clfs.base.Classifier method) (mvpa2.clfs.blr.Classifier method) (mvpa2.clfs.enet.Classifier method) (mvpa2.clfs.gda.Classifier method) (mvpa2.clfs.glmnet.Classifier method) (mvpa2.clfs.gnb.Classifier method) (mvpa2.clfs.gpr.Classifier method) (mvpa2.clfs.knn.Classifier method) (mvpa2.clfs.lars.Classifier method) (mvpa2.clfs.mass.Classifier method) (mvpa2.clfs.meta.Classifier method) (mvpa2.clfs.meta.CombinedClassifier method) (mvpa2.clfs.meta.ProxyClassifier method) (mvpa2.clfs.meta.TreeClassifier method) (mvpa2.clfs.plr.Classifier method) (mvpa2.clfs.ridge.Classifier method) (mvpa2.clfs.smlr.Classifier method) (mvpa2.clfs.svm.SVM method) (mvpa2.clfs.warehouse.SVM method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.featsel.rfe.ProxyClassifier method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) (mvpa2.testing.clfs.Classifier method) (mvpa2.testing.clfs.SVM method) summary_targets() (in module mvpa2.datasets.miscfx) (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method) SummaryStatistics (class in mvpa2.clfs.transerror) sumofabs_sample() (in module mvpa2.mappers.fx) Supervised Support support_lists() (in module mvpa2.support.nibabel.afni_niml) surf_from_any() (in module mvpa2.datasets.gifti) surf_project_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method) surf_project_weights() (mvpa2.misc.surfing.volsurf.VolSurf method) surf_project_weights_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method) surf_unproject_weights_nodewise() (mvpa2.misc.surfing.volsurf.VolSurf method) surface Surface (class in mvpa2.support.nibabel.surf) SurfaceQueryEngine (class in mvpa2.misc.surfing.queryengine) SurfaceRingQueryEngine (class in mvpa2.misc.surfing.queryengine) SurfaceSpec (class in mvpa2.support.nibabel.afni_suma_spec) SurfaceVerticesQueryEngine (class in mvpa2.algorithms.searchlight_hyperalignment) (class in mvpa2.misc.surfing.queryengine) SurfaceVoxelsQueryEngine (class in mvpa2.misc.surfing.queryengine) sv (mvpa2.algorithms.hyperalignment.SVDMapper attribute) (mvpa2.mappers.svd.SVDMapper attribute) SVD SVDMapper (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.mappers.svd) SVM, [1] (class in mvpa2.clfs.svm) (class in mvpa2.clfs.warehouse) (class in mvpa2.testing.clfs) sweepargs() (in module mvpa2.testing) SWIG

T

T (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) t0 (mvpa2.datasets.eep.EEPBin attribute) table2string() (in module mvpa2.base.dochelpers) (in module mvpa2.clfs.transerror) (in module mvpa2.datasets.miscfx) tail (mvpa2.clfs.stats.NullDist attribute) TailSelector (class in mvpa2.featsel.helpers) take_action() (mvpa2.misc.cmdline.Option method) takes_value() (mvpa2.misc.cmdline.Option method) Target target2nearest_source() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) target2sources() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) targets (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) teardown_module() (in module mvpa2.tests) tell() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) test() (in module mvpa2) Testing Dataset text() (mvpa2.base.report.Report method) textbook TextWrapper (class in mvpa2.base.state) threshold (mvpa2.featsel.helpers.FixedErrorThresholdStopCrit attribute) time() (mvpa2.base.report.datetime method) Time-compression timed() (in module mvpa2.testing) (in module mvpa2.testing.tools) timesegments_classification() (in module mvpa2.algorithms.benchmarks.hyperalignment) timeseries_boxplot() (in module mvpa2.misc.plot) (in module mvpa2.misc.plot.base) timetuple() (mvpa2.base.report.datetime method) timetz() (mvpa2.base.report.datetime method) tmodes (mvpa2.misc.fsl.melodic.MelodicResults attribute) to_events() (mvpa2.misc.fsl.base.FslEV3 method) (mvpa2.misc.fsl.FslEV3 method) to_gifti_image() (in module mvpa2.support.nibabel.surf_gifti) to_lightsvm_format() (in module mvpa2.datasets.formats) to_literal() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) to_niml() (in module mvpa2.datasets.niml) to_npz() (mvpa2.base.dataset.AttrDataset method) (mvpa2.base.learner.AttrDataset method) (mvpa2.datasets.base.AttrDataset method) (mvpa2.datasets.gifti.AttrDataset method) (mvpa2.featsel.helpers.AttrDataset method) (mvpa2.measures.base.AttrDataset method) (mvpa2.misc.surfing.queryengine.AttrDataset method)

to_numeric() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) to_one_column_array() (in module mvpa2.misc.surfing.volgeom) to_real_space() (mvpa2.atlases.base.SpaceTransformation method) (mvpa2.atlases.warehouse.SpaceTransformation method) to_three_column_array() (in module mvpa2.misc.surfing.volgeom) to_vector() (in module mvpa2.misc.surfing.volgeom) to_voxel_space() (mvpa2.atlases.base.SpaceTransformation method) (mvpa2.atlases.warehouse.SpaceTransformation method) to_xml() (in module mvpa2.support.nibabel.surf_gifti) toarray() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) (mvpa2.misc.bv.BrainVoyagerRTC method) (mvpa2.misc.bv.base.BrainVoyagerRTC method) (mvpa2.misc.fsl.McFlirtParams method) (mvpa2.misc.fsl.base.McFlirtParams method) tocoo() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) tocsc() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) tocsr() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) todia() (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) todo todok() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) tofile() (mvpa2.misc.bv.base.ColumnData method) (mvpa2.misc.bv.ColumnData method) (mvpa2.misc.fsl.ColumnData method) (mvpa2.misc.fsl.FslEV3 method) (mvpa2.misc.fsl.McFlirtParams method) (mvpa2.misc.fsl.base.ColumnData method) (mvpa2.misc.fsl.base.FslEV3 method) (mvpa2.misc.fsl.base.McFlirtParams method) (mvpa2.misc.io.ColumnData method) (mvpa2.misc.io.SampleAttributes method) (mvpa2.misc.io.base.ColumnData method) (mvpa2.misc.io.base.SampleAttributes method) TraceBack (class in mvpa2.base.verbosity) train() (mvpa2.algorithms.group_clusterthr.Learner method) (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.algorithms.hyperalignment.Hyperalignment method) (mvpa2.algorithms.searchlight_hyperalignment.Hyperalignment method) (mvpa2.algorithms.searchlight_hyperalignment.Sphere method) (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.base.learner.CompoundLearner method) (mvpa2.base.learner.Learner method) (mvpa2.clfs.base.Learner method) (mvpa2.clfs.meta.PredictionsCombiner method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.datasets.cosmo.CosmoQueryEngine method) (mvpa2.datasets.cosmo.QueryEngineInterface method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.Learner method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.skl_adaptor.Learner method) (mvpa2.measures.base.Learner method) (mvpa2.measures.gnbsearchlight.Sphere method) (mvpa2.measures.nnsearchlight.Sphere method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.measures.searchlight.Sphere method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.neighborhood.IdentityNeighborhood method) (mvpa2.misc.neighborhood.QueryEngine method) (mvpa2.misc.neighborhood.QueryEngineInterface method) (mvpa2.misc.neighborhood.Sphere method) (mvpa2.misc.surfing.queryengine.QueryEngineInterface method) (mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method) (mvpa2.misc.surfing.volgeom.ChainMapper method) (mvpa2.misc.surfing.volgeom.Sphere method) train_pmeasure (mvpa2.featsel.base.IterativeFeatureSelection attribute) (mvpa2.featsel.ifs.IterativeFeatureSelection attribute) (mvpa2.featsel.rfe.IterativeFeatureSelection attribute) trained (mvpa2.clfs.base.Classifier attribute) (mvpa2.clfs.blr.Classifier attribute) (mvpa2.clfs.enet.Classifier attribute) (mvpa2.clfs.gda.Classifier attribute) (mvpa2.clfs.glmnet.Classifier attribute) (mvpa2.clfs.gnb.Classifier attribute) (mvpa2.clfs.gpr.Classifier attribute) (mvpa2.clfs.knn.Classifier attribute) (mvpa2.clfs.lars.Classifier attribute) (mvpa2.clfs.mass.Classifier attribute) (mvpa2.clfs.meta.Classifier attribute) (mvpa2.clfs.plr.Classifier attribute) (mvpa2.clfs.ridge.Classifier attribute) (mvpa2.clfs.smlr.Classifier attribute) (mvpa2.testing.clfs.Classifier attribute) Training Dataset TransferMeasure (class in mvpa2.measures.base) transfermeasure (mvpa2.measures.base.CrossValidation attribute) transform_with_boxcar() (in module mvpa2.misc.support) transpose() (mvpa2.algorithms.group_clusterthr.dok_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.coo_matrix method) (mvpa2.algorithms.searchlight_hyperalignment.csc_matrix method) TransposeMapper (class in mvpa2.mappers.shape) trapz() (in module mvpa2.misc.errorfx) TreeClassifier (class in mvpa2.clfs.meta) triples2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method) truevar_per_ic (mvpa2.misc.fsl.melodic.MelodicResults attribute) truncate() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) ttest ttest() (in module mvpa2.support.nibabel.afni_niml_dset) ttest_1samp() (in module mvpa2.misc.stats) TuebingenMEG (class in mvpa2.misc.io.meg) TuebingenMEGSensorLocations (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) Tutorial, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12] tutorial TYPE_CHECKER (mvpa2.misc.cmdline.Option attribute) TYPED_ACTIONS (mvpa2.misc.cmdline.Option attribute) TYPES (mvpa2.misc.cmdline.Option attribute) tzinfo (mvpa2.base.report.datetime attribute) tzname() (mvpa2.base.report.datetime method)

U

uattrs (mvpa2.mappers.fx.FxMapper attribute) Ubuntu UC (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) ulabels (mvpa2.clfs.gda.GDA attribute) (mvpa2.clfs.gnb.GNB attribute) (mvpa2.clfs.warehouse.GNB attribute) uncache() (mvpa2.misc.plot.lightbox.SpatialImage method) unicode_whitespace_trans (mvpa2.base.state.TextWrapper attribute) UniformLengthCollection (class in mvpa2.base.collections) unique (mvpa2.base.collections.SequenceCollectable attribute) unique_combinations() (in module mvpa2.misc.support) unique_path_parts() (in module mvpa2.misc.plot.scatter) uniquechunks (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) uniquetargets (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute)

unittests UnivariateStatsModels (class in mvpa2.measures.statsmodels_adaptor) unstructured_xy2grid_xy_vectors() (in module mvpa2.misc.plot.flat_surf) untrain() (mvpa2.algorithms.group_clusterthr.Learner method) (mvpa2.algorithms.hyperalignment.ChainMapper method) (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.base.learner.CompoundLearner method) (mvpa2.base.learner.Learner method) (mvpa2.clfs.base.Learner method) (mvpa2.clfs.transerror.ClassifierError method) (mvpa2.datasets.base.ChainMapper method) (mvpa2.datasets.cosmo.ChainMapper method) (mvpa2.datasets.cosmo.CosmoQueryEngine method) (mvpa2.featsel.rfe.ClassifierError method) (mvpa2.mappers.base.ChainMapper method) (mvpa2.mappers.base.Learner method) (mvpa2.mappers.flatten.ChainMapper method) (mvpa2.mappers.skl_adaptor.Learner method) (mvpa2.measures.base.Learner method) (mvpa2.measures.searchlight.ChainMapper method) (mvpa2.misc.neighborhood.CachedQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceRingQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVoxelsQueryEngine method) (mvpa2.misc.surfing.volgeom.ChainMapper method) update() (mvpa2.algorithms.group_clusterthr.Counter method) (mvpa2.base.collections.Collection method) (mvpa2.datasets.cosmo.Collection method) update_header() (mvpa2.misc.plot.lightbox.SpatialImage method) update_sensitivity (mvpa2.featsel.rfe.RFE attribute) upper (mvpa2.clfs.warehouse.RangeElementSelector attribute) (mvpa2.featsel.helpers.RangeElementSelector attribute) usevalues (mvpa2.clfs.warehouse.OddEvenPartitioner attribute) (mvpa2.generators.partition.OddEvenPartitioner attribute) (mvpa2.testing.datasets.OddEvenPartitioner attribute) uspace (mvpa2.base.state.TextWrapper attribute) UT (mvpa2.algorithms.group_clusterthr.Dataset attribute) (mvpa2.algorithms.hyperalignment.Dataset attribute) (mvpa2.clfs.base.Dataset attribute) (mvpa2.clfs.glmnet.Dataset attribute) (mvpa2.clfs.gnb.Dataset attribute) (mvpa2.clfs.gpr.Dataset attribute) (mvpa2.clfs.knn.Dataset attribute) (mvpa2.clfs.lars.Dataset attribute) (mvpa2.clfs.meta.Dataset attribute) (mvpa2.clfs.plr.Dataset attribute) (mvpa2.clfs.smlr.Dataset attribute) (mvpa2.clfs.stats.Dataset attribute) (mvpa2.clfs.transerror.Dataset attribute) (mvpa2.datasets.base.Dataset attribute) (mvpa2.datasets.cosmo.Dataset attribute) (mvpa2.datasets.eeglab.Dataset attribute) (mvpa2.datasets.eep.Dataset attribute) (mvpa2.datasets.eventrelated.Dataset attribute) (mvpa2.datasets.formats.Dataset attribute) (mvpa2.datasets.gifti.Dataset attribute) (mvpa2.datasets.miscfx.Dataset attribute) (mvpa2.datasets.mri.Dataset attribute) (mvpa2.datasets.niml.Dataset attribute) (mvpa2.mappers.filters.Dataset attribute) (mvpa2.mappers.fx.Dataset attribute) (mvpa2.mappers.fxy.Dataset attribute) (mvpa2.mappers.glm.Dataset attribute) (mvpa2.mappers.shape.Dataset attribute) (mvpa2.mappers.zscore.Dataset attribute) (mvpa2.measures.anova.Dataset attribute) (mvpa2.measures.base.Dataset attribute) (mvpa2.measures.corrcoef.Dataset attribute) (mvpa2.measures.irelief.Dataset attribute) (mvpa2.measures.noiseperturbation.Dataset attribute) (mvpa2.measures.rsa.Dataset attribute) (mvpa2.measures.searchlight.Dataset attribute) (mvpa2.measures.statsmodels_adaptor.Dataset attribute) (mvpa2.measures.winner.Dataset attribute) (mvpa2.misc.data_generators.Dataset attribute) (mvpa2.misc.plot.flat_surf.Dataset attribute) (mvpa2.testing.clfs.Dataset attribute) (mvpa2.testing.datasets.Dataset attribute) utcfromtimestamp() (mvpa2.base.report.datetime method) utcnow() (mvpa2.base.report.datetime method) utcoffset() (mvpa2.base.report.datetime method) utctimetuple() (mvpa2.base.report.datetime method)

V

value (mvpa2.algorithms.group_clusterthr.Parameter attribute) (mvpa2.algorithms.hyperalignment.Parameter attribute) (mvpa2.algorithms.searchlight_hyperalignment.Parameter attribute) (mvpa2.base.attributes.Collectable attribute) (mvpa2.base.collections.Collectable attribute) (mvpa2.base.param.Parameter attribute) (mvpa2.clfs.base.Parameter attribute) (mvpa2.clfs.gda.Parameter attribute) (mvpa2.clfs.glmnet.Parameter attribute) (mvpa2.clfs.gnb.Parameter attribute) (mvpa2.clfs.gpr.Parameter attribute) (mvpa2.clfs.meta.Parameter attribute) (mvpa2.clfs.smlr.Parameter attribute) (mvpa2.clfs.transerror.Collectable attribute) (mvpa2.kernels.base.Parameter attribute) (mvpa2.kernels.libsvm.Parameter attribute) (mvpa2.kernels.np.Parameter attribute) (mvpa2.kernels.sg.Parameter attribute) (mvpa2.mappers.detrend.Parameter attribute) (mvpa2.mappers.filters.Parameter attribute) (mvpa2.mappers.fx.Parameter attribute) (mvpa2.mappers.glm.Parameter attribute) (mvpa2.mappers.procrustean.Parameter attribute) (mvpa2.measures.rsa.Parameter attribute) value2idx() (in module mvpa2.datasets.eventrelated) (in module mvpa2.misc.support) values() (mvpa2.clfs.base.AttributeMap method) (mvpa2.clfs.gnb.AttributeMap method) (mvpa2.clfs.meta.AttributeMap method) (mvpa2.datasets.formats.AttributeMap method) (mvpa2.measures.base.AttributeMap method) (mvpa2.misc.attrmap.AttributeMap method) (mvpa2.misc.plot.AttributeMap method) (mvpa2.misc.plot.base.AttributeMap method) (mvpa2.misc.surfing.volume_mask_dict.Mapping method) var (mvpa2.mappers.mdp_adaptor.PCAMapper attribute) variance_1sv() (in module mvpa2.misc.errorfx) variances (mvpa2.clfs.gnb.GNB attribute) (mvpa2.clfs.warehouse.GNB attribute) vector_alignment_find_rotation() (in module mvpa2.misc.plot.flat_surf) (in module mvpa2.support.nibabel.surf)

verbosity, [1] Version (class in mvpa2.misc.support) version (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) version_to_tuple() (in module mvpa2.misc.support) vertex_id2nearest_feature_id() (mvpa2.algorithms.searchlight_hyperalignment.SurfaceVerticesQueryEngine method) (mvpa2.misc.surfing.queryengine.SurfaceVerticesQueryEngine method) vertices (mvpa2.support.nibabel.surf.Surface attribute) view() (mvpa2.datasets.base.HollowSamples method) (mvpa2.testing.datasets.HollowSamples method) VolGeom (class in mvpa2.misc.surfing.volgeom) volgeom (mvpa2.misc.surfing.volsurf.VolSurf attribute) (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary attribute) VolSurf (class in mvpa2.misc.surfing.volsurf) VolSurfMapping (class in mvpa2.misc.surfing.volsurf) VolSurfMaximalMapping (class in mvpa2.misc.surfing.volsurf) VolSurfMinimalLowresMapping (class in mvpa2.misc.surfing.volsurf) VolSurfMinimalMapping (class in mvpa2.misc.surfing.volsurf) VolumeBasedSurface (class in mvpa2.misc.surfing.volsurf) VolumeMaskDictionary (class in mvpa2.misc.surfing.volume_mask_dict) vonoroi_map_to_high_resolution_surf() (mvpa2.support.nibabel.surf.Surface method) voxdim (mvpa2.atlases.base.XMLBasedAtlas attribute) (mvpa2.atlases.fsl.XMLBasedAtlas attribute) (mvpa2.atlases.warehouse.XMLBasedAtlas attribute) voxel_count_nifti_image() (mvpa2.misc.surfing.volsurf.VolSurfMapping method) voxel_selection() (in module mvpa2.misc.surfing.surf_voxel_selection) VoxelSelector (class in mvpa2.misc.surfing.surf_voxel_selection) VProperty (class in mvpa2.misc.vproperty) vstack() (in module mvpa2.algorithms.benchmarks.hyperalignment) (in module mvpa2.base.dataset) (in module mvpa2.datasets.sources.openfmri) (in module mvpa2.featsel.base) (in module mvpa2.mappers.filters) (in module mvpa2.measures.anova) (in module mvpa2.measures.base) (in module mvpa2.measures.winner) (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets)

W

Warehouse (class in mvpa2.clfs.warehouse) warning, [1] WarningLog (class in mvpa2.base) WaveletPacketMapper (class in mvpa2.mappers.wavelet) WaveletTransformationMapper (class in mvpa2.mappers.wavelet) Weight Vector weights (mvpa2.clfs.enet.ENET attribute) (mvpa2.clfs.lars.LARS attribute) (mvpa2.clfs.smlr.SMLR attribute) (mvpa2.clfs.warehouse.SMLR attribute) (mvpa2.testing.clfs.SMLR attribute) which_set() (mvpa2.base.state.Collection method) white_surface (mvpa2.misc.surfing.volsurf.VolSurf attribute) whitespace_trans (mvpa2.base.state.TextWrapper attribute) Who is using it? Windows Windows installer WinnerMeasure (class in mvpa2.measures.winner) wipe_out_offdiag() (in module mvpa2.algorithms.benchmarks.hyperalignment) with_setup() (in module mvpa2.testing) (in module mvpa2.testing.tools) with_tempfile() (in module mvpa2.testing) (in module mvpa2.testing.tools) wordsep_re (mvpa2.base.state.TextWrapper attribute) wordsep_simple_re (mvpa2.base.state.TextWrapper attribute) wr1996() (in module mvpa2.misc.data_generators) (in module mvpa2.testing.datasets)

wrap() (mvpa2.base.state.TextWrapper method) writable() (mvpa2.support.nibabel.afni_niml.BytesIO method) write() (in module mvpa2.datasets.niml) (in module mvpa2.support.nibabel.afni_niml) (in module mvpa2.support.nibabel.afni_niml_annot) (in module mvpa2.support.nibabel.afni_niml_dset) (in module mvpa2.support.nibabel.afni_suma_1d) (in module mvpa2.support.nibabel.afni_suma_spec) (in module mvpa2.support.nibabel.surf) (in module mvpa2.support.nibabel.surf_fs_asc) (in module mvpa2.support.nibabel.surf_gifti) (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.base.report.Report method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) (mvpa2.support.nibabel.afni_suma_spec.SurfaceSpec method) (mvpa2.support.nibabel.surf.Surface method) writelines() (mvpa2.base.dochelpers.StringIO method) (mvpa2.base.info.StringIO method) (mvpa2.clfs.transerror.StringIO method) (mvpa2.support.nibabel.afni_niml.BytesIO method) WTF (class in mvpa2.base.info) wtf() (in module mvpa2) (in module mvpa2.base.info) (in module mvpa2.tests)

X

x (mvpa2.base.state.TextWrapper attribute) XAVRSensorLocations (class in mvpa2.misc.io) (class in mvpa2.misc.io.base) xml() (mvpa2.base.report.Report method) XMLBasedAtlas (class in mvpa2.atlases.base) (class in mvpa2.atlases.fsl) (class in mvpa2.atlases.warehouse)

xrandom_iterprod() (in module mvpa2.generators.partition) (in module mvpa2.misc.support) xrandom_unique_combinations() (in module mvpa2.misc.support) xunique_combinations() (in module mvpa2.misc.support) xyz2ijk() (mvpa2.misc.surfing.volgeom.VolGeom method) xyz2lin() (mvpa2.misc.surfing.volgeom.VolGeom method) xyz_source() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method) xyz_target() (mvpa2.misc.surfing.volume_mask_dict.VolumeMaskDictionary method)

Z

zeros() (in module mvpa2.clfs.gda) (in module mvpa2.clfs.gnb) zscore() (in module mvpa2.algorithms.benchmarks.hyperalignment) (in module mvpa2.algorithms.hyperalignment) (in module mvpa2.mappers.zscore)

ZScoreMapper (class in mvpa2.algorithms.hyperalignment) (class in mvpa2.mappers.zscore)