Man page for pymvpa2ΒΆ
NAME
scatter - command line interface for PyMVPASYNOPSIS
pymvpa2 [,-h/] [,--version/] [,--dbg/] [,--dbg-channel COMMON_DEBUG/] [,--preload PRELOAD/] [,--verbose /[,COMMON_VERBOSE/]] ,{info,mkds,mkevds,describe,dump,preproc,crossval,searchlight,select,atlaslabeler,exec,plotmotionqc,ttest} /...DESCRIPTION
scatter not available: No module named _tkinter, please install the python-tk packageThis is the command line interface of the PyMVPA framework. Specific functionality is provided through a collection of sub-commands. Available sub-commands are:
info: Query various information about a PyMVPA installation.
mkds: Create a PyMVPA dataset from various sources.
mkevds: Extract (multi-sample) events from a dataset
describe: Describe a dataset's content
dump: Dump dataset components in various formats
preproc: Preprocess a PyMVPA dataset.
crossval: Cross-validation of a learner's performance
searchlight: Traveling ROI analysis
select: Select a subset of samples and/or features from a dataset
atlaslabeler: Query atlases for anatomical labels of voxel coordinates, or their
- statistics
exec: Execute arbitrary Python expressions (on datasets)
(scatter): not available in this installation: No module named _tkinter, please
- install the python-tk package
plotmotionqc: Generate a QC plot for (BOLD fMRI) motion estimates of multiple segments.
ttest: t-test across multiple volumes against some chance level
Detailed usage information for individual commands is available via command-specific help options, i.e.: bin/pymvpa2 <command> --help
OPTIONS
- -h, --help, --help-np
- show this help message and exit. --help-np forcefully disables the use of a pager for displaying the help.
- --version
- show program's version and license information and exit
- --dbg
- invoke a debugger when a crash occurs
- --dbg-channel COMMON_DEBUG
- enable debug channel (see 'info' command for available channels)
- --preload PRELOAD
- filename of a custom Python script that is executed prior to, and in the same session as the actual command. This can be used to modify the execution environment, for example creating a custom classifier instance. This option can be given multiple times, and the associated scripts are ran in order of their appearance on the command line.
- --verbose [COMMON_VERBOSE]
- output verbosity level
AUTHOR
Written by Michael Hanke & Yaroslav Halchenko, and numerous other contributors.COPYRIGHT
Copyright © 2006-2016 PyMVPA developersPermission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
