mvpa2.mappers

Algorithms for (reversible) data transformation.

Mappers are objects than can take data, either in a Dataset, or plain data arrays, and transform them in some specific way. There are no general limitations on what this transformation might be. it can be as simple as selecting a subset of data (e.g. StaticFeatureSelection) or more complex data projection (e.g. PCAMapper).

Mapping algorithms might be unsupervised or supervised techniques, and any mapper might implement a training step that has to be run before it can be used.

Note

Classifiers from the mvpa2.clfs module could also be considered mappers as well, but they all are supervised, and only provide ND->1D mapping (from data samples onto the target labels), most of the time without the possibility for reverse transformation.

Modes Of Operation

Training

All mappers can be trained by passing a training dataset to their train() method. Mappers that do not need to be trained will silently ignore this call. Mappers do not modify training datasets.

Forward-mapping

The mapper takes a dataset (or plain data array), transforms it, and returns a new dataset (or data array). Mappers follow a copy-on-write (COW) scheme that only changes/copies data that is modified by the mapper – all other information will be shared by input and output dataset. If this behavior is not appropriate in a particular case, the input dataset should be copied manually and only the copy should be given to the mapper.

Forward-mapping is possible via two different methods: forward() takes either a Dataset, or an at least two-dimensional data array. In the latter case, the first axis is assumed to separate between samples, as in a dataset. The method will return the transformation result in the same format: either a dataset, or an array with at least two dimensions. forward1() on the other hand only takes plain data arrays that have to be of the same shape as a single sample in the dataset that the mapper has been trained on. It will also return a plain data array.

Reverse-mapping

If a mapper supports reversing a transformation, dataset and plain data arrays can be reverse-mapped with the corresponding method. reverse() and reverse1() behave analogous to the respective forward-mapping functions, and also have the same requirement for their input data.